Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17155 | 3' | -50.3 | NC_004333.2 | + | 1499 | 0.66 | 0.901662 |
Target: 5'- cUCGaACugCGCGAGCGaCGgcgagUCGGc--- -3' miRNA: 3'- -AGC-UGugGCGCUCGC-GCa----AGUUuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 46862 | 0.67 | 0.894414 |
Target: 5'- aUCGACGCCGU--GCGC--UCGAAAGa -3' miRNA: 3'- -AGCUGUGGCGcuCGCGcaAGUUUUUc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 20677 | 0.67 | 0.893673 |
Target: 5'- cCGACugCGCGAGgccgagcCGCGccugCAGAAAc -3' miRNA: 3'- aGCUGugGCGCUC-------GCGCaa--GUUUUUc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 20166 | 0.67 | 0.886879 |
Target: 5'- cUCGGcCGCCGgcuCGGGCGCacaCAAGAAGg -3' miRNA: 3'- -AGCU-GUGGC---GCUCGCGcaaGUUUUUC- -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 3372 | 0.67 | 0.886879 |
Target: 5'- cCGcGCGCCGCc-GCGCGcaCAAGGAGa -3' miRNA: 3'- aGC-UGUGGCGcuCGCGCaaGUUUUUC- -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 47252 | 0.67 | 0.886879 |
Target: 5'- cUCuGCugCGCGgcAGCGCGUUCu----- -3' miRNA: 3'- -AGcUGugGCGC--UCGCGCAAGuuuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 31308 | 0.67 | 0.886879 |
Target: 5'- aCGGCGCUGCGccGCGCGgccgUCGc---- -3' miRNA: 3'- aGCUGUGGCGCu-CGCGCa---AGUuuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 43590 | 0.67 | 0.886879 |
Target: 5'- cUCGAa--CGCGAGUGCGcgagCAAGAAu -3' miRNA: 3'- -AGCUgugGCGCUCGCGCaa--GUUUUUc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 15666 | 0.67 | 0.879062 |
Target: 5'- cCGugACCGaCGAGCaGCGUgCGAc--- -3' miRNA: 3'- aGCugUGGC-GCUCG-CGCAaGUUuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 17416 | 0.67 | 0.870969 |
Target: 5'- cUUGACACCGCuGcgugcgcuauacAGCGCGaUCAGAu-- -3' miRNA: 3'- -AGCUGUGGCG-C------------UCGCGCaAGUUUuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 12032 | 0.67 | 0.862609 |
Target: 5'- gUCGACGCUGCGuGCaagGCGcUCGAc--- -3' miRNA: 3'- -AGCUGUGGCGCuCG---CGCaAGUUuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 10866 | 0.67 | 0.861758 |
Target: 5'- cUUGACGCCGCGcgggaagaacgccGGCGCGacagUCAc---- -3' miRNA: 3'- -AGCUGUGGCGC-------------UCGCGCa---AGUuuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 11697 | 0.68 | 0.857467 |
Target: 5'- uUCGACACguuCGCGcgcgaagugacggccGGCGCGUuUCAGGAu- -3' miRNA: 3'- -AGCUGUG---GCGC---------------UCGCGCA-AGUUUUuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 6709 | 0.68 | 0.835999 |
Target: 5'- gCG-CGCUGcCGAGCGCGaUCGAGuuGa -3' miRNA: 3'- aGCuGUGGC-GCUCGCGCaAGUUUuuC- -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 17360 | 0.68 | 0.835999 |
Target: 5'- -gGACGCUGCGccGGCcgGCGUUCAcgucGAAGGc -3' miRNA: 3'- agCUGUGGCGC--UCG--CGCAAGU----UUUUC- -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 44389 | 0.68 | 0.835999 |
Target: 5'- cUCGGCGgCGCGuGCGCGguaCAAc--- -3' miRNA: 3'- -AGCUGUgGCGCuCGCGCaa-GUUuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 25216 | 0.68 | 0.826652 |
Target: 5'- gUCGACGcCCGCGAcGCuGcCGUUCGGGu-- -3' miRNA: 3'- -AGCUGU-GGCGCU-CG-C-GCAAGUUUuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 7753 | 0.68 | 0.826652 |
Target: 5'- aCGACGCCGUGGuCGgGUUCGc---- -3' miRNA: 3'- aGCUGUGGCGCUcGCgCAAGUuuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 28841 | 0.68 | 0.826652 |
Target: 5'- gCGcCGCCGCGAcccGCGCGgUCGAc--- -3' miRNA: 3'- aGCuGUGGCGCU---CGCGCaAGUUuuuc -5' |
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17155 | 3' | -50.3 | NC_004333.2 | + | 44573 | 0.68 | 0.817082 |
Target: 5'- aUCGACACCGaCGcgauggucGGCGUGUggGAAAAc -3' miRNA: 3'- -AGCUGUGGC-GC--------UCGCGCAagUUUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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