miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 5' -59.5 NC_004333.2 + 328 0.71 0.224323
Target:  5'- uGCACCGGAauGGcCGUaccgcccgaaauGCCCGUCGgcGCu -3'
miRNA:   3'- cCGUGGCCU--CC-GCA------------UGGGCGGCaaCG- -5'
17155 5' -59.5 NC_004333.2 + 721 0.66 0.455359
Target:  5'- aGCGCCGu-GGCGagguugaUUGCCGUUGCg -3'
miRNA:   3'- cCGUGGCcuCCGCaug----GGCGGCAACG- -5'
17155 5' -59.5 NC_004333.2 + 2397 0.68 0.373585
Target:  5'- cGGCGCCGGcGGuCGccUGgUCGCCGUacaGCg -3'
miRNA:   3'- -CCGUGGCCuCC-GC--AUgGGCGGCAa--CG- -5'
17155 5' -59.5 NC_004333.2 + 3270 0.66 0.465034
Target:  5'- cGCGCCGGGccGGCucACCgGCCucgUGCu -3'
miRNA:   3'- cCGUGGCCU--CCGcaUGGgCGGca-ACG- -5'
17155 5' -59.5 NC_004333.2 + 5934 0.71 0.247622
Target:  5'- cGGCACCacGGGCGUggcgugcauaaauACCgGCCGgcGCu -3'
miRNA:   3'- -CCGUGGccUCCGCA-------------UGGgCGGCaaCG- -5'
17155 5' -59.5 NC_004333.2 + 6669 0.68 0.373585
Target:  5'- cGGCGCUGGGcGGCG----CGCCGUgGCg -3'
miRNA:   3'- -CCGUGGCCU-CCGCauggGCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 6833 0.66 0.484698
Target:  5'- cGGCuACCucGAGGCGcgcgACCggggCGCCGUgGCg -3'
miRNA:   3'- -CCG-UGGc-CUCCGCa---UGG----GCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 6888 0.67 0.427005
Target:  5'- -cCGCCGGA-GUG---CCGCCGUUGCg -3'
miRNA:   3'- ccGUGGCCUcCGCaugGGCGGCAACG- -5'
17155 5' -59.5 NC_004333.2 + 9236 0.71 0.224323
Target:  5'- cGCGCCgaacGGGGGCGc-CUCGCCGcgUGCg -3'
miRNA:   3'- cCGUGG----CCUCCGCauGGGCGGCa-ACG- -5'
17155 5' -59.5 NC_004333.2 + 9502 0.72 0.207691
Target:  5'- cGGCgaACCGGAcGGCGUgcgcaGCCCGCagg-GCa -3'
miRNA:   3'- -CCG--UGGCCU-CCGCA-----UGGGCGgcaaCG- -5'
17155 5' -59.5 NC_004333.2 + 9631 0.66 0.474815
Target:  5'- cGGCuGCCGGcGGCGcGCCUGCgCccgGCu -3'
miRNA:   3'- -CCG-UGGCCuCCGCaUGGGCG-GcaaCG- -5'
17155 5' -59.5 NC_004333.2 + 9749 0.74 0.159765
Target:  5'- aGCGCCGGAuGCGcGCCCGUCGUcaacgaGCg -3'
miRNA:   3'- cCGUGGCCUcCGCaUGGGCGGCAa-----CG- -5'
17155 5' -59.5 NC_004333.2 + 11708 0.73 0.182339
Target:  5'- aGCGCCGGGcGGCGUGCUgG-CGUccUGCg -3'
miRNA:   3'- cCGUGGCCU-CCGCAUGGgCgGCA--ACG- -5'
17155 5' -59.5 NC_004333.2 + 12287 0.7 0.281068
Target:  5'- cGGCACCGGcGGCGcGCauugCGgCGUccUGCg -3'
miRNA:   3'- -CCGUGGCCuCCGCaUGg---GCgGCA--ACG- -5'
17155 5' -59.5 NC_004333.2 + 12441 0.67 0.426078
Target:  5'- gGGCGCgGGcGGGCGcUAcggcgccCCCGaCCGUcGCg -3'
miRNA:   3'- -CCGUGgCC-UCCGC-AU-------GGGC-GGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 13518 0.68 0.356814
Target:  5'- uGGuCGCCGuccgacgugcucGcGGCGUugCCGCCGgcgGCc -3'
miRNA:   3'- -CC-GUGGC------------CuCCGCAugGGCGGCaa-CG- -5'
17155 5' -59.5 NC_004333.2 + 13898 0.66 0.504751
Target:  5'- cGGCACgGGcugcgcGGCGg--CUGCCGUgGCg -3'
miRNA:   3'- -CCGUGgCCu-----CCGCaugGGCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 14029 0.66 0.473832
Target:  5'- cGGcCGCCGGccugaagucgccaAGGCG-GCCaCGCUGgcgGCa -3'
miRNA:   3'- -CC-GUGGCC-------------UCCGCaUGG-GCGGCaa-CG- -5'
17155 5' -59.5 NC_004333.2 + 17074 0.68 0.390883
Target:  5'- aGCGCgGcGAcGGCGUAUgCCGCgaGUUGCg -3'
miRNA:   3'- cCGUGgC-CU-CCGCAUG-GGCGg-CAACG- -5'
17155 5' -59.5 NC_004333.2 + 17451 0.68 0.365133
Target:  5'- gGGCACCGGAuguGGCGcaacgcgaaGgCCGCCGc-GCu -3'
miRNA:   3'- -CCGUGGCCU---CCGCa--------UgGGCGGCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.