miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17156 3' -56 NC_004333.2 + 12324 0.66 0.660717
Target:  5'- aGCCUCGcGCGGGUugacgUUC-GCAUUCa -3'
miRNA:   3'- gCGGAGCaCGCCCGca---AAGaUGUGGG- -5'
17156 3' -56 NC_004333.2 + 11709 0.66 0.649774
Target:  5'- gCGCCgggcggCGUGCuGGCGUc-CUGCGCg- -3'
miRNA:   3'- -GCGGa-----GCACGcCCGCAaaGAUGUGgg -5'
17156 3' -56 NC_004333.2 + 13091 0.66 0.62785
Target:  5'- gGaCCUCGcGCaGGCGUUg--AUGCCCg -3'
miRNA:   3'- gC-GGAGCaCGcCCGCAAagaUGUGGG- -5'
17156 3' -56 NC_004333.2 + 18176 0.67 0.616889
Target:  5'- uGCCggCGUGcCGGGUGa---UGCGCUCg -3'
miRNA:   3'- gCGGa-GCAC-GCCCGCaaagAUGUGGG- -5'
17156 3' -56 NC_004333.2 + 2436 0.67 0.605941
Target:  5'- uGCCUUGguacgGCGcGGCGaacacCUGCGCgCCg -3'
miRNA:   3'- gCGGAGCa----CGC-CCGCaaa--GAUGUG-GG- -5'
17156 3' -56 NC_004333.2 + 9635 0.67 0.595016
Target:  5'- uGCCg---GCGGcGCGc--CUGCGCCCg -3'
miRNA:   3'- gCGGagcaCGCC-CGCaaaGAUGUGGG- -5'
17156 3' -56 NC_004333.2 + 2503 0.67 0.572184
Target:  5'- uGCCUCGagauCGGGCGcgacguacauguaUUUgUACGCCUg -3'
miRNA:   3'- gCGGAGCac--GCCCGC-------------AAAgAUGUGGG- -5'
17156 3' -56 NC_004333.2 + 39176 0.68 0.551709
Target:  5'- cCGCC-CGUGCuGcGCGcg-CUGCACCg -3'
miRNA:   3'- -GCGGaGCACGcC-CGCaaaGAUGUGGg -5'
17156 3' -56 NC_004333.2 + 26186 0.68 0.509406
Target:  5'- uCGuCCUgCuUGCGGGCGg--CUAC-CCCg -3'
miRNA:   3'- -GC-GGA-GcACGCCCGCaaaGAUGuGGG- -5'
17156 3' -56 NC_004333.2 + 41977 0.68 0.509406
Target:  5'- uCGCCa-GUGCGGGCGa--CcGCGCCa -3'
miRNA:   3'- -GCGGagCACGCCCGCaaaGaUGUGGg -5'
17156 3' -56 NC_004333.2 + 22041 0.71 0.383299
Target:  5'- gGCCcgcaGUGCGGGCcguuugucGUUUCUGCGCa- -3'
miRNA:   3'- gCGGag--CACGCCCG--------CAAAGAUGUGgg -5'
17156 3' -56 NC_004333.2 + 37204 0.71 0.348868
Target:  5'- uCGCgUCGUGCGGcgugaGCGcUUCgagcACGCCCc -3'
miRNA:   3'- -GCGgAGCACGCC-----CGCaAAGa---UGUGGG- -5'
17156 3' -56 NC_004333.2 + 12451 0.72 0.324528
Target:  5'- gCGCCgggCGgggcGCGGGCGggcgCUacgGCGCCCc -3'
miRNA:   3'- -GCGGa--GCa---CGCCCGCaaa-GA---UGUGGG- -5'
17156 3' -56 NC_004333.2 + 4175 0.76 0.169915
Target:  5'- cCGCgCUCGUGCugcagcGGCGUgugcUUCUGCGCCUg -3'
miRNA:   3'- -GCG-GAGCACGc-----CCGCA----AAGAUGUGGG- -5'
17156 3' -56 NC_004333.2 + 18709 1.13 0.000439
Target:  5'- cCGCCUCGUGCGGGCGUUUCUACACCCg -3'
miRNA:   3'- -GCGGAGCACGCCCGCAAAGAUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.