miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17157 3' -54.1 NC_004333.2 + 27524 0.66 0.756994
Target:  5'- ---cGCUCGAGCCgaacuacccgaaUGGCGccuggUCGAcaGCCGu -3'
miRNA:   3'- ucuuCGAGCUUGG------------ACCGC-----AGCU--UGGC- -5'
17157 3' -54.1 NC_004333.2 + 13913 0.66 0.746508
Target:  5'- ---cGCUCGAcgcggcGCCcGuCGUCGAACCGu -3'
miRNA:   3'- ucuuCGAGCU------UGGaCcGCAGCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 42277 0.66 0.746508
Target:  5'- cGAAG-UCGAGCCgcaGGCauaCGGGCCGa -3'
miRNA:   3'- uCUUCgAGCUUGGa--CCGca-GCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 44970 0.66 0.735903
Target:  5'- gAGAcgcAGCUCGAucAgCUGGCGcagCGAGUCGg -3'
miRNA:   3'- -UCU---UCGAGCU--UgGACCGCa--GCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 30399 0.66 0.725191
Target:  5'- cGAAGC---GACC-GGCGcCGGACCGa -3'
miRNA:   3'- uCUUCGagcUUGGaCCGCaGCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 31167 0.66 0.725191
Target:  5'- cGccGCUgaCGGGCCaGGCGcCGAACCu -3'
miRNA:   3'- uCuuCGA--GCUUGGaCCGCaGCUUGGc -5'
17157 3' -54.1 NC_004333.2 + 6824 0.67 0.713298
Target:  5'- cGAGGCgcgCGAccggggcGCCgUGGCGcUCGAAUUGa -3'
miRNA:   3'- uCUUCGa--GCU-------UGG-ACCGC-AGCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 38219 0.68 0.648198
Target:  5'- aAGAucGGCggcCGggUC-GGCGUCGAACgCGa -3'
miRNA:   3'- -UCU--UCGa--GCuuGGaCCGCAGCUUG-GC- -5'
17157 3' -54.1 NC_004333.2 + 7548 0.68 0.623667
Target:  5'- cGAAGCUgGAAuucgugacgaucCCggaauaugacacGGCGUCGGGCCGu -3'
miRNA:   3'- uCUUCGAgCUU------------GGa-----------CCGCAGCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 10769 0.69 0.592512
Target:  5'- ---cGCgUCGAACa--GCGUCGAACCGa -3'
miRNA:   3'- ucuuCG-AGCUUGgacCGCAGCUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 12871 0.69 0.559434
Target:  5'- -uGGGCcUGGGCCUGcaguGCGUCGAGCCc -3'
miRNA:   3'- ucUUCGaGCUUGGAC----CGCAGCUUGGc -5'
17157 3' -54.1 NC_004333.2 + 30725 0.7 0.495083
Target:  5'- uGGcAAGCUCG-GCCgUGGCGUC--GCCGa -3'
miRNA:   3'- -UC-UUCGAGCuUGG-ACCGCAGcuUGGC- -5'
17157 3' -54.1 NC_004333.2 + 22467 0.71 0.444141
Target:  5'- cGAGGCUCguGAACaUGGUGUCcAGCCGa -3'
miRNA:   3'- uCUUCGAG--CUUGgACCGCAGcUUGGC- -5'
17157 3' -54.1 NC_004333.2 + 9555 0.75 0.26022
Target:  5'- cAGAAGCUCGAGCagcucGGCGgCGGugCGg -3'
miRNA:   3'- -UCUUCGAGCUUGga---CCGCaGCUugGC- -5'
17157 3' -54.1 NC_004333.2 + 19321 1.09 0.001104
Target:  5'- aAGAAGCUCGAACCUGGCGUCGAACCGa -3'
miRNA:   3'- -UCUUCGAGCUUGGACCGCAGCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.