miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17157 5' -55.3 NC_004333.2 + 48025 0.66 0.658261
Target:  5'- -aCGcCGACGaccagCGCGC-CGAGCAGc- -3'
miRNA:   3'- aaGCaGCUGUa----GCGCGaGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 16823 0.66 0.658261
Target:  5'- -gUGUCGAagcguUCGUaucGCUCGAGCAGc- -3'
miRNA:   3'- aaGCAGCUgu---AGCG---CGAGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 22509 0.66 0.64698
Target:  5'- --gGUCGcCAUCGCGUUCcucGGCGGUc -3'
miRNA:   3'- aagCAGCuGUAGCGCGAGc--UCGUCAa -5'
17157 5' -55.3 NC_004333.2 + 19927 0.66 0.601824
Target:  5'- aUCGaCGACGagCGCGC-CGGGCGGc- -3'
miRNA:   3'- aAGCaGCUGUa-GCGCGaGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 31540 0.66 0.601824
Target:  5'- gUUCGUCGACGauguUUGCGUUCGcGGCGu-- -3'
miRNA:   3'- -AAGCAGCUGU----AGCGCGAGC-UCGUcaa -5'
17157 5' -55.3 NC_004333.2 + 37200 0.67 0.590578
Target:  5'- gUCGUgCGGCGUgaGCGCUuCGAGCAc-- -3'
miRNA:   3'- aAGCA-GCUGUAg-CGCGA-GCUCGUcaa -5'
17157 5' -55.3 NC_004333.2 + 47212 0.67 0.579369
Target:  5'- gUCGccgCGACGggCGCGCuacuuUCGAGCGGa- -3'
miRNA:   3'- aAGCa--GCUGUa-GCGCG-----AGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 28882 0.67 0.579369
Target:  5'- cUCGUgcCGcGCgAUCGCGCUCGGcGCAGg- -3'
miRNA:   3'- aAGCA--GC-UG-UAGCGCGAGCU-CGUCaa -5'
17157 5' -55.3 NC_004333.2 + 31199 0.67 0.568206
Target:  5'- aUUCGcCGGgcUCGCGCgCGAGCAGc- -3'
miRNA:   3'- -AAGCaGCUguAGCGCGaGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 11698 0.67 0.568206
Target:  5'- -cCGUCGACGcaGCGC-CGGGCGGc- -3'
miRNA:   3'- aaGCAGCUGUagCGCGaGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 7317 0.67 0.557097
Target:  5'- aUCGUCaGGCGUUGcCGCgagaaaccgccuUCGGGCGGUUu -3'
miRNA:   3'- aAGCAG-CUGUAGC-GCG------------AGCUCGUCAA- -5'
17157 5' -55.3 NC_004333.2 + 41049 0.67 0.554883
Target:  5'- aUCGUCGACAcguuUCGCGCcgccaauccgcaCGuGCGGUUu -3'
miRNA:   3'- aAGCAGCUGU----AGCGCGa-----------GCuCGUCAA- -5'
17157 5' -55.3 NC_004333.2 + 20567 0.67 0.533985
Target:  5'- aUCGUCGGCgcgucggGUCGCGC-CGuGguGUUu -3'
miRNA:   3'- aAGCAGCUG-------UAGCGCGaGCuCguCAA- -5'
17157 5' -55.3 NC_004333.2 + 20942 0.68 0.524183
Target:  5'- cUCGUCGcCgcccauaccuuGUgGCGUUCGAGCAGg- -3'
miRNA:   3'- aAGCAGCuG-----------UAgCGCGAGCUCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 22581 0.68 0.513373
Target:  5'- gUCGUcaCGACAUCgGCGCUCGuGUuGUUc -3'
miRNA:   3'- aAGCA--GCUGUAG-CGCGAGCuCGuCAA- -5'
17157 5' -55.3 NC_004333.2 + 19213 0.69 0.470085
Target:  5'- cUCG-CGGCGUUccgcacgGCGCUCGAGCAa-- -3'
miRNA:   3'- aAGCaGCUGUAG-------CGCGAGCUCGUcaa -5'
17157 5' -55.3 NC_004333.2 + 37811 0.69 0.460831
Target:  5'- cUCGUCGAUcUCGCGCaggCGcGGCAGc- -3'
miRNA:   3'- aAGCAGCUGuAGCGCGa--GC-UCGUCaa -5'
17157 5' -55.3 NC_004333.2 + 48143 0.69 0.454715
Target:  5'- cUCGUCGGCAccgagcagcacgacaUCGCGCaUGAGCAc-- -3'
miRNA:   3'- aAGCAGCUGU---------------AGCGCGaGCUCGUcaa -5'
17157 5' -55.3 NC_004333.2 + 26849 0.69 0.440618
Target:  5'- -cUGUCG-CGUCGCGCUCG-GCAa-- -3'
miRNA:   3'- aaGCAGCuGUAGCGCGAGCuCGUcaa -5'
17157 5' -55.3 NC_004333.2 + 17475 0.7 0.392393
Target:  5'- -gCGUCGugAcCGCGCUgcgCGAGCAGc- -3'
miRNA:   3'- aaGCAGCugUaGCGCGA---GCUCGUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.