miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17158 3' -55.6 NC_004333.2 + 29275 0.66 0.655625
Target:  5'- ---cGGCuggaacgacgccauGCGCGGGuucgUGCAgcgGCCCGAc -3'
miRNA:   3'- ugaaCCG--------------CGCGUCCua--ACGU---UGGGCU- -5'
17158 3' -55.6 NC_004333.2 + 2517 0.66 0.647796
Target:  5'- ---cGGCGCGCAGGuGUUcGCcGCgCCGu -3'
miRNA:   3'- ugaaCCGCGCGUCC-UAA-CGuUG-GGCu -5'
17158 3' -55.6 NC_004333.2 + 20850 0.66 0.647796
Target:  5'- gGCUUGGaGCGCAGGcgUGuCGACg--- -3'
miRNA:   3'- -UGAACCgCGCGUCCuaAC-GUUGggcu -5'
17158 3' -55.6 NC_004333.2 + 18330 0.66 0.646677
Target:  5'- ---aGGUGUGCAGGGUUcugcggauuagcaGCGugCCGu -3'
miRNA:   3'- ugaaCCGCGCGUCCUAA-------------CGUugGGCu -5'
17158 3' -55.6 NC_004333.2 + 29331 0.66 0.636599
Target:  5'- gGCUcgGGcCGCGUAGGAgcGCAGCauGGa -3'
miRNA:   3'- -UGAa-CC-GCGCGUCCUaaCGUUGggCU- -5'
17158 3' -55.6 NC_004333.2 + 33358 0.67 0.591873
Target:  5'- ---cGGCGCGCcgucguGGAacgccUGCuGCCCGAu -3'
miRNA:   3'- ugaaCCGCGCGu-----CCUa----ACGuUGGGCU- -5'
17158 3' -55.6 NC_004333.2 + 46252 0.67 0.591873
Target:  5'- --gUGGCGCGCAuucuGAacgGCGAcCCCGAu -3'
miRNA:   3'- ugaACCGCGCGUc---CUaa-CGUU-GGGCU- -5'
17158 3' -55.6 NC_004333.2 + 42940 0.67 0.580755
Target:  5'- --aUGGUGgGCucgccGGGAUgcgcUGCAACCCGc -3'
miRNA:   3'- ugaACCGCgCG-----UCCUA----ACGUUGGGCu -5'
17158 3' -55.6 NC_004333.2 + 3252 0.67 0.579646
Target:  5'- ---cGGCcucgugcucaCGCAGGAUacguccgUGCAACCCGGu -3'
miRNA:   3'- ugaaCCGc---------GCGUCCUA-------ACGUUGGGCU- -5'
17158 3' -55.6 NC_004333.2 + 14072 0.67 0.547702
Target:  5'- ---gGGUGCGCAGGcaaagcugaUGCAGCgCGAu -3'
miRNA:   3'- ugaaCCGCGCGUCCua-------ACGUUGgGCU- -5'
17158 3' -55.6 NC_004333.2 + 18606 0.67 0.536811
Target:  5'- gGCgcGGCagGCGCGGGcg-GCAACCCu- -3'
miRNA:   3'- -UGaaCCG--CGCGUCCuaaCGUUGGGcu -5'
17158 3' -55.6 NC_004333.2 + 20922 0.68 0.483631
Target:  5'- --gUGGCGUucgaGCAGGAUgcgcgGCcGCCCGu -3'
miRNA:   3'- ugaACCGCG----CGUCCUAa----CGuUGGGCu -5'
17158 3' -55.6 NC_004333.2 + 45021 0.69 0.452962
Target:  5'- gACgUGcGCGCGCAGGAUaGCug-CCGAc -3'
miRNA:   3'- -UGaAC-CGCGCGUCCUAaCGuugGGCU- -5'
17158 3' -55.6 NC_004333.2 + 14458 0.69 0.433115
Target:  5'- --aUGGCgaccGCGCAGGcaAUUGCcGACCUGAa -3'
miRNA:   3'- ugaACCG----CGCGUCC--UAACG-UUGGGCU- -5'
17158 3' -55.6 NC_004333.2 + 8307 0.7 0.413783
Target:  5'- ---cGGCGCGCGGGGcucGCGcCCCGc -3'
miRNA:   3'- ugaaCCGCGCGUCCUaa-CGUuGGGCu -5'
17158 3' -55.6 NC_004333.2 + 12374 0.71 0.333725
Target:  5'- gGC-UGGCGCGCAGGAcgccGCAAUgCGc -3'
miRNA:   3'- -UGaACCGCGCGUCCUaa--CGUUGgGCu -5'
17158 3' -55.6 NC_004333.2 + 28534 0.73 0.265617
Target:  5'- gACUgUGGCGCGCGuaacugGCGGCCCGAc -3'
miRNA:   3'- -UGA-ACCGCGCGUccuaa-CGUUGGGCU- -5'
17158 3' -55.6 NC_004333.2 + 9518 0.76 0.163445
Target:  5'- cGCcUGGUGCGCAGGAcgGCGAaCCGGa -3'
miRNA:   3'- -UGaACCGCGCGUCCUaaCGUUgGGCU- -5'
17158 3' -55.6 NC_004333.2 + 20913 1.08 0.000814
Target:  5'- uACUUGGCGCGCAGGAUUGCAACCCGAc -3'
miRNA:   3'- -UGAACCGCGCGUCCUAACGUUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.