Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17159 | 3' | -50.1 | NC_004333.2 | + | 46193 | 0.67 | 0.907466 |
Target: 5'- aGgGcUGGGCGCGUcUCGcgCCGGAUCa -3' miRNA: 3'- -CgCaGCUUGCGCAuAGCa-GGCUUAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 44915 | 0.66 | 0.942704 |
Target: 5'- uGCGUCucGAUGCGUcgCGcgcgCCGAagaaGUCGg -3' miRNA: 3'- -CGCAGc-UUGCGCAuaGCa---GGCU----UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 41500 | 0.66 | 0.956468 |
Target: 5'- cGCGUCGAGCaGCGcc-UGUUCG-AUCa -3' miRNA: 3'- -CGCAGCUUG-CGCauaGCAGGCuUAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 39583 | 0.66 | 0.956468 |
Target: 5'- aUGUCGAuauaGCcgaucgGCGUGUCGUCCGuuaCGc -3' miRNA: 3'- cGCAGCU----UG------CGCAUAGCAGGCuuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 38524 | 0.72 | 0.714159 |
Target: 5'- uUGUCGAucugugcgACGCGUugcCGUCCGAcgCGc -3' miRNA: 3'- cGCAGCU--------UGCGCAua-GCAGGCUuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 38243 | 0.69 | 0.853615 |
Target: 5'- gGCGgccauugCGAGCgGCGUgccaagAUCGgcggCCGggUCGg -3' miRNA: 3'- -CGCa------GCUUG-CGCA------UAGCa---GGCuuAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 37827 | 0.69 | 0.823965 |
Target: 5'- cGCGaUCGAguaccagacacagaACGCGaUcgCGUCCGGAcUCGa -3' miRNA: 3'- -CGC-AGCU--------------UGCGC-AuaGCAGGCUU-AGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 37378 | 0.67 | 0.93211 |
Target: 5'- cGCGUCGcGCGgcCGUccucAUCGUCCuacGUCGg -3' miRNA: 3'- -CGCAGCuUGC--GCA----UAGCAGGcu-UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 37250 | 0.68 | 0.878293 |
Target: 5'- cGCGUCguGAGCgGCGUGUCG-CCGcgcugCGg -3' miRNA: 3'- -CGCAG--CUUG-CGCAUAGCaGGCuua--GC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 33894 | 0.67 | 0.919747 |
Target: 5'- gGCGUCGAuaacaucACGgGUAauaucgCGUCCGcagcAUCGa -3' miRNA: 3'- -CGCAGCU-------UGCgCAUa-----GCAGGCu---UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 32310 | 0.7 | 0.795013 |
Target: 5'- uGCGUcagcaggucggucaCGAGCGCGUGcaCGgcugCCGggUCGc -3' miRNA: 3'- -CGCA--------------GCUUGCGCAUa-GCa---GGCuuAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 32144 | 0.68 | 0.900589 |
Target: 5'- aCGUCGAACGCGgcgacUGUCGgcaggCCGGc--- -3' miRNA: 3'- cGCAGCUUGCGC-----AUAGCa----GGCUuagc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 31009 | 0.66 | 0.942704 |
Target: 5'- gGCGUaucgcCGGACGUG-AUCGUCgCGAugaaggcaagcGUCGa -3' miRNA: 3'- -CGCA-----GCUUGCGCaUAGCAG-GCU-----------UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 30906 | 0.7 | 0.804856 |
Target: 5'- cGCGUCGAGCGCGUcgacgcuugccuucAUCG-CaCG-AUCa -3' miRNA: 3'- -CGCAGCUUGCGCA--------------UAGCaG-GCuUAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 30852 | 0.67 | 0.931551 |
Target: 5'- cGCGUCGAGCGCcuggCGguucuccUCCGAcGUCu -3' miRNA: 3'- -CGCAGCUUGCGcauaGC-------AGGCU-UAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 29991 | 0.7 | 0.814511 |
Target: 5'- gGCGcCGAGCGCGagcAccaugcggcgccgcUCGUCgGGAUCGg -3' miRNA: 3'- -CGCaGCUUGCGCa--U--------------AGCAGgCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 28965 | 0.73 | 0.624896 |
Target: 5'- cGCgGUCGAACGCGgcgAUCaGUugcgcggccgCCGggUCGg -3' miRNA: 3'- -CG-CAGCUUGCGCa--UAG-CA----------GGCuuAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 28766 | 0.69 | 0.853615 |
Target: 5'- cGCGUCGAccGCGCGgGUCGcggCGGcgCGa -3' miRNA: 3'- -CGCAGCU--UGCGCaUAGCag-GCUuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 25281 | 0.66 | 0.947572 |
Target: 5'- aGCGUCGcGgGCGUcgaCGU-CGAGUCGc -3' miRNA: 3'- -CGCAGCuUgCGCAua-GCAgGCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 23810 | 0.7 | 0.788016 |
Target: 5'- cGCGUCGAGCugccCGUuacgaCGUCCGAcgCa -3' miRNA: 3'- -CGCAGCUUGc---GCAua---GCAGGCUuaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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