Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17159 | 3' | -50.1 | NC_004333.2 | + | 23731 | 0.69 | 0.853615 |
Target: 5'- uGCGUCGGACGuCGUAacgggcagcUCGacgcgcgaCGAGUCGu -3' miRNA: 3'- -CGCAGCUUGC-GCAU---------AGCag------GCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 22554 | 0.68 | 0.873542 |
Target: 5'- aGCGaCGAGCGCGcggugaaacccgccGUCGUCaCGAcAUCGg -3' miRNA: 3'- -CGCaGCUUGCGCa-------------UAGCAG-GCU-UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 22090 | 0.66 | 0.956468 |
Target: 5'- uGCGUCGAgaaaacgcccGCGCGcugauUCGcgCCGAcgCa -3' miRNA: 3'- -CGCAGCU----------UGCGCau---AGCa-GGCUuaGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 21533 | 1.11 | 0.00276 |
Target: 5'- cGCGUCGAACGCGUAUCGUCCGAAUCGc -3' miRNA: 3'- -CGCAGCUUGCGCAUAGCAGGCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 21033 | 0.69 | 0.862095 |
Target: 5'- cGCGcCGcGCGCGUuugCGUCCGGc--- -3' miRNA: 3'- -CGCaGCuUGCGCAua-GCAGGCUuagc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 20996 | 0.69 | 0.826761 |
Target: 5'- uGCGuuUCGAGCGCGUGgcagcCGUCaCGGG-CGa -3' miRNA: 3'- -CGC--AGCUUGCGCAUa----GCAG-GCUUaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 18103 | 0.66 | 0.947572 |
Target: 5'- aGCG-CGAucaGCGCGUAgaacUCGgCCGGcuucGUCGg -3' miRNA: 3'- -CGCaGCU---UGCGCAU----AGCaGGCU----UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 18083 | 0.66 | 0.952159 |
Target: 5'- gGCGauucucugCGAGCGCGccaCGUCCGcauUCGg -3' miRNA: 3'- -CGCa-------GCUUGCGCauaGCAGGCuu-AGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 15874 | 0.66 | 0.942704 |
Target: 5'- gGCGUCG-GCGCG-AUCGaacgcUUCGAgAUCGa -3' miRNA: 3'- -CGCAGCuUGCGCaUAGC-----AGGCU-UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 13856 | 0.66 | 0.956468 |
Target: 5'- cGCGUCGAGCGCauugagCGcgCCGcgccgcgcgaAGUCGg -3' miRNA: 3'- -CGCAGCUUGCGcaua--GCa-GGC----------UUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 13747 | 0.67 | 0.926382 |
Target: 5'- -aGUCGAGCGCGUAggaCG-CCGcg-CGc -3' miRNA: 3'- cgCAGCUUGCGCAUa--GCaGGCuuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 13469 | 0.66 | 0.952159 |
Target: 5'- cGCGUcgCGAAUGCGcaggCGUUCGAucUCGu -3' miRNA: 3'- -CGCA--GCUUGCGCaua-GCAGGCUu-AGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 12888 | 0.66 | 0.953915 |
Target: 5'- uGCGUCGAGCccggauagcgGCGUGUUGaacuggaagaauucuUCCGucgccuuGUCGa -3' miRNA: 3'- -CGCAGCUUG----------CGCAUAGC---------------AGGCu------UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 10769 | 0.67 | 0.926382 |
Target: 5'- cGCGUCGAACaGCG--UCGaaCCGAGUg- -3' miRNA: 3'- -CGCAGCUUG-CGCauAGCa-GGCUUAgc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 10087 | 0.66 | 0.952159 |
Target: 5'- -gGUCGGAuCGCGguacagGUCGUagacgcgauUCGGAUCGa -3' miRNA: 3'- cgCAGCUU-GCGCa-----UAGCA---------GGCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 9781 | 0.68 | 0.893432 |
Target: 5'- gGCGUuucgCGAAcCGCGUG-CG-CCGAAUCc -3' miRNA: 3'- -CGCA----GCUU-GCGCAUaGCaGGCUUAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 8916 | 0.68 | 0.900589 |
Target: 5'- gGCGUCGAugcgcgACGCGgcuUCGUUCGcgcCGg -3' miRNA: 3'- -CGCAGCU------UGCGCau-AGCAGGCuuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 3769 | 0.69 | 0.844894 |
Target: 5'- aGCGUCG-ACGUGg--CGUUCuGAUCGg -3' miRNA: 3'- -CGCAGCuUGCGCauaGCAGGcUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 3696 | 0.69 | 0.826761 |
Target: 5'- cGCGUCGuAGCuGCGgAUCGUCUG-GUUGa -3' miRNA: 3'- -CGCAGC-UUG-CGCaUAGCAGGCuUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 2550 | 0.74 | 0.602427 |
Target: 5'- aGCGUCGAucgucucgaacaACGCGgcuUCGUUCGGcgCGc -3' miRNA: 3'- -CGCAGCU------------UGCGCau-AGCAGGCUuaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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