Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17159 | 3' | -50.1 | NC_004333.2 | + | 29991 | 0.7 | 0.814511 |
Target: 5'- gGCGcCGAGCGCGagcAccaugcggcgccgcUCGUCgGGAUCGg -3' miRNA: 3'- -CGCaGCUUGCGCa--U--------------AGCAGgCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 232 | 0.67 | 0.926382 |
Target: 5'- uGCGUCGGgucgccccACGcCGUGcCGUUCGAugugGUCGu -3' miRNA: 3'- -CGCAGCU--------UGC-GCAUaGCAGGCU----UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 37378 | 0.67 | 0.93211 |
Target: 5'- cGCGUCGcGCGgcCGUccucAUCGUCCuacGUCGg -3' miRNA: 3'- -CGCAGCuUGC--GCA----UAGCAGGcu-UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 13856 | 0.66 | 0.956468 |
Target: 5'- cGCGUCGAGCGCauugagCGcgCCGcgccgcgcgaAGUCGg -3' miRNA: 3'- -CGCAGCUUGCGcaua--GCa-GGC----------UUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 3769 | 0.69 | 0.844894 |
Target: 5'- aGCGUCG-ACGUGg--CGUUCuGAUCGg -3' miRNA: 3'- -CGCAGCuUGCGCauaGCAGGcUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 21533 | 1.11 | 0.00276 |
Target: 5'- cGCGUCGAACGCGUAUCGUCCGAAUCGc -3' miRNA: 3'- -CGCAGCUUGCGCAUAGCAGGCUUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 28965 | 0.73 | 0.624896 |
Target: 5'- cGCgGUCGAACGCGgcgAUCaGUugcgcggccgCCGggUCGg -3' miRNA: 3'- -CG-CAGCUUGCGCa--UAG-CA----------GGCuuAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 38524 | 0.72 | 0.714159 |
Target: 5'- uUGUCGAucugugcgACGCGUugcCGUCCGAcgCGc -3' miRNA: 3'- cGCAGCU--------UGCGCAua-GCAGGCUuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 32310 | 0.7 | 0.795013 |
Target: 5'- uGCGUcagcaggucggucaCGAGCGCGUGcaCGgcugCCGggUCGc -3' miRNA: 3'- -CGCA--------------GCUUGCGCAUa-GCa---GGCuuAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 13747 | 0.67 | 0.926382 |
Target: 5'- -aGUCGAGCGCGUAggaCG-CCGcg-CGc -3' miRNA: 3'- cgCAGCUUGCGCAUa--GCaGGCuuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 8916 | 0.68 | 0.900589 |
Target: 5'- gGCGUCGAugcgcgACGCGgcuUCGUUCGcgcCGg -3' miRNA: 3'- -CGCAGCU------UGCGCau-AGCAGGCuuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 22554 | 0.68 | 0.873542 |
Target: 5'- aGCGaCGAGCGCGcggugaaacccgccGUCGUCaCGAcAUCGg -3' miRNA: 3'- -CGCaGCUUGCGCa-------------UAGCAG-GCU-UAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 37827 | 0.69 | 0.823965 |
Target: 5'- cGCGaUCGAguaccagacacagaACGCGaUcgCGUCCGGAcUCGa -3' miRNA: 3'- -CGC-AGCU--------------UGCGC-AuaGCAGGCUU-AGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 32144 | 0.68 | 0.900589 |
Target: 5'- aCGUCGAACGCGgcgacUGUCGgcaggCCGGc--- -3' miRNA: 3'- cGCAGCUUGCGC-----AUAGCa----GGCUuagc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 3696 | 0.69 | 0.826761 |
Target: 5'- cGCGUCGuAGCuGCGgAUCGUCUG-GUUGa -3' miRNA: 3'- -CGCAGC-UUG-CGCaUAGCAGGCuUAGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 28766 | 0.69 | 0.853615 |
Target: 5'- cGCGUCGAccGCGCGgGUCGcggCGGcgCGa -3' miRNA: 3'- -CGCAGCU--UGCGCaUAGCag-GCUuaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 46193 | 0.67 | 0.907466 |
Target: 5'- aGgGcUGGGCGCGUcUCGcgCCGGAUCa -3' miRNA: 3'- -CgCaGCUUGCGCAuAGCa-GGCUUAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 30852 | 0.67 | 0.931551 |
Target: 5'- cGCGUCGAGCGCcuggCGguucuccUCCGAcGUCu -3' miRNA: 3'- -CGCAGCUUGCGcauaGC-------AGGCU-UAGc -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 20996 | 0.69 | 0.826761 |
Target: 5'- uGCGuuUCGAGCGCGUGgcagcCGUCaCGGG-CGa -3' miRNA: 3'- -CGC--AGCUUGCGCAUa----GCAG-GCUUaGC- -5' |
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17159 | 3' | -50.1 | NC_004333.2 | + | 23731 | 0.69 | 0.853615 |
Target: 5'- uGCGUCGGACGuCGUAacgggcagcUCGacgcgcgaCGAGUCGu -3' miRNA: 3'- -CGCAGCUUGC-GCAU---------AGCag------GCUUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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