miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17159 3' -50.1 NC_004333.2 + 39583 0.66 0.956468
Target:  5'- aUGUCGAuauaGCcgaucgGCGUGUCGUCCGuuaCGc -3'
miRNA:   3'- cGCAGCU----UG------CGCAUAGCAGGCuuaGC- -5'
17159 3' -50.1 NC_004333.2 + 2550 0.74 0.602427
Target:  5'- aGCGUCGAucgucucgaacaACGCGgcuUCGUUCGGcgCGc -3'
miRNA:   3'- -CGCAGCU------------UGCGCau-AGCAGGCUuaGC- -5'
17159 3' -50.1 NC_004333.2 + 227 0.71 0.757139
Target:  5'- gGCGcCGAuCGUGUGcUCGcgCCGAAUCa -3'
miRNA:   3'- -CGCaGCUuGCGCAU-AGCa-GGCUUAGc -5'
17159 3' -50.1 NC_004333.2 + 23810 0.7 0.788016
Target:  5'- cGCGUCGAGCugccCGUuacgaCGUCCGAcgCa -3'
miRNA:   3'- -CGCAGCUUGc---GCAua---GCAGGCUuaGc -5'
17159 3' -50.1 NC_004333.2 + 38243 0.69 0.853615
Target:  5'- gGCGgccauugCGAGCgGCGUgccaagAUCGgcggCCGggUCGg -3'
miRNA:   3'- -CGCa------GCUUG-CGCA------UAGCa---GGCuuAGC- -5'
17159 3' -50.1 NC_004333.2 + 21033 0.69 0.862095
Target:  5'- cGCGcCGcGCGCGUuugCGUCCGGc--- -3'
miRNA:   3'- -CGCaGCuUGCGCAua-GCAGGCUuagc -5'
17159 3' -50.1 NC_004333.2 + 37250 0.68 0.878293
Target:  5'- cGCGUCguGAGCgGCGUGUCG-CCGcgcugCGg -3'
miRNA:   3'- -CGCAG--CUUG-CGCAUAGCaGGCuua--GC- -5'
17159 3' -50.1 NC_004333.2 + 9781 0.68 0.893432
Target:  5'- gGCGUuucgCGAAcCGCGUG-CG-CCGAAUCc -3'
miRNA:   3'- -CGCA----GCUU-GCGCAUaGCaGGCUUAGc -5'
17159 3' -50.1 NC_004333.2 + 33894 0.67 0.919747
Target:  5'- gGCGUCGAuaacaucACGgGUAauaucgCGUCCGcagcAUCGa -3'
miRNA:   3'- -CGCAGCU-------UGCgCAUa-----GCAGGCu---UAGC- -5'
17159 3' -50.1 NC_004333.2 + 10769 0.67 0.926382
Target:  5'- cGCGUCGAACaGCG--UCGaaCCGAGUg- -3'
miRNA:   3'- -CGCAGCUUG-CGCauAGCa-GGCUUAgc -5'
17159 3' -50.1 NC_004333.2 + 22090 0.66 0.956468
Target:  5'- uGCGUCGAgaaaacgcccGCGCGcugauUCGcgCCGAcgCa -3'
miRNA:   3'- -CGCAGCU----------UGCGCau---AGCa-GGCUuaGc -5'
17159 3' -50.1 NC_004333.2 + 41500 0.66 0.956468
Target:  5'- cGCGUCGAGCaGCGcc-UGUUCG-AUCa -3'
miRNA:   3'- -CGCAGCUUG-CGCauaGCAGGCuUAGc -5'
17159 3' -50.1 NC_004333.2 + 18103 0.66 0.947572
Target:  5'- aGCG-CGAucaGCGCGUAgaacUCGgCCGGcuucGUCGg -3'
miRNA:   3'- -CGCaGCU---UGCGCAU----AGCaGGCU----UAGC- -5'
17159 3' -50.1 NC_004333.2 + 25281 0.66 0.947572
Target:  5'- aGCGUCGcGgGCGUcgaCGU-CGAGUCGc -3'
miRNA:   3'- -CGCAGCuUgCGCAua-GCAgGCUUAGC- -5'
17159 3' -50.1 NC_004333.2 + 15874 0.66 0.942704
Target:  5'- gGCGUCG-GCGCG-AUCGaacgcUUCGAgAUCGa -3'
miRNA:   3'- -CGCAGCuUGCGCaUAGC-----AGGCU-UAGC- -5'
17159 3' -50.1 NC_004333.2 + 31009 0.66 0.942704
Target:  5'- gGCGUaucgcCGGACGUG-AUCGUCgCGAugaaggcaagcGUCGa -3'
miRNA:   3'- -CGCA-----GCUUGCGCaUAGCAG-GCU-----------UAGC- -5'
17159 3' -50.1 NC_004333.2 + 13856 0.66 0.956468
Target:  5'- cGCGUCGAGCGCauugagCGcgCCGcgccgcgcgaAGUCGg -3'
miRNA:   3'- -CGCAGCUUGCGcaua--GCa-GGC----------UUAGC- -5'
17159 3' -50.1 NC_004333.2 + 28965 0.73 0.624896
Target:  5'- cGCgGUCGAACGCGgcgAUCaGUugcgcggccgCCGggUCGg -3'
miRNA:   3'- -CG-CAGCUUGCGCa--UAG-CA----------GGCuuAGC- -5'
17159 3' -50.1 NC_004333.2 + 38524 0.72 0.714159
Target:  5'- uUGUCGAucugugcgACGCGUugcCGUCCGAcgCGc -3'
miRNA:   3'- cGCAGCU--------UGCGCAua-GCAGGCUuaGC- -5'
17159 3' -50.1 NC_004333.2 + 32310 0.7 0.795013
Target:  5'- uGCGUcagcaggucggucaCGAGCGCGUGcaCGgcugCCGggUCGc -3'
miRNA:   3'- -CGCA--------------GCUUGCGCAUa-GCa---GGCuuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.