miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17159 5' -52.1 NC_004333.2 + 38549 0.66 0.860349
Target:  5'- uGCCGUCccauuGCGGCAGCGCaaucauCGCg -3'
miRNA:   3'- cCGGUAGacc--UGUCGUUGCGaau---GCG- -5'
17159 5' -52.1 NC_004333.2 + 28229 0.66 0.860349
Target:  5'- gGGCgCGUCacgGuGACcGUGACGCgcGCGCg -3'
miRNA:   3'- -CCG-GUAGa--C-CUGuCGUUGCGaaUGCG- -5'
17159 5' -52.1 NC_004333.2 + 21210 0.66 0.860349
Target:  5'- uGCgCAUCaaUGGGCGGCcguCGC--GCGCa -3'
miRNA:   3'- cCG-GUAG--ACCUGUCGuu-GCGaaUGCG- -5'
17159 5' -52.1 NC_004333.2 + 37095 0.66 0.851731
Target:  5'- cGCUAUCgaGGACgucgGGCAGCuGCgggGCGUg -3'
miRNA:   3'- cCGGUAGa-CCUG----UCGUUG-CGaa-UGCG- -5'
17159 5' -52.1 NC_004333.2 + 8982 0.66 0.851731
Target:  5'- gGGCCG--UGcGCGGCGGCGaccgACGCg -3'
miRNA:   3'- -CCGGUagACcUGUCGUUGCgaa-UGCG- -5'
17159 5' -52.1 NC_004333.2 + 26783 0.66 0.851731
Target:  5'- aGCCGUCUGccGACgAGUAggcGCGCUU-CGUu -3'
miRNA:   3'- cCGGUAGAC--CUG-UCGU---UGCGAAuGCG- -5'
17159 5' -52.1 NC_004333.2 + 25794 0.66 0.851731
Target:  5'- cGGCCugcagCUGGcCGGCGAgcaagccauucuCGCggGCGUu -3'
miRNA:   3'- -CCGGua---GACCuGUCGUU------------GCGaaUGCG- -5'
17159 5' -52.1 NC_004333.2 + 47255 0.66 0.851731
Target:  5'- uGCCucugCUGcGCGGCAGCGCguucuuccgGCGUc -3'
miRNA:   3'- cCGGua--GACcUGUCGUUGCGaa-------UGCG- -5'
17159 5' -52.1 NC_004333.2 + 32821 0.66 0.851731
Target:  5'- uGGCCGgc--GGCAGCGAC-C-UGCGCg -3'
miRNA:   3'- -CCGGUagacCUGUCGUUGcGaAUGCG- -5'
17159 5' -52.1 NC_004333.2 + 9067 0.66 0.842867
Target:  5'- cGCCgAUCUGcGugAGCGccucGCgguaaaucugGCUUGCGCu -3'
miRNA:   3'- cCGG-UAGAC-CugUCGU----UG----------CGAAUGCG- -5'
17159 5' -52.1 NC_004333.2 + 4825 0.66 0.842867
Target:  5'- cGCCcggaAUCUGGAUAGuCGGCuGaccgUACGCg -3'
miRNA:   3'- cCGG----UAGACCUGUC-GUUG-Cga--AUGCG- -5'
17159 5' -52.1 NC_004333.2 + 37790 0.66 0.842867
Target:  5'- aGGCCAa--GGAUgcgaAGCGGCGCgaugcgaaGCGCg -3'
miRNA:   3'- -CCGGUagaCCUG----UCGUUGCGaa------UGCG- -5'
17159 5' -52.1 NC_004333.2 + 7949 0.66 0.842867
Target:  5'- cGCCGUC-GGACgAGUAGuCGCcaUACGUg -3'
miRNA:   3'- cCGGUAGaCCUG-UCGUU-GCGa-AUGCG- -5'
17159 5' -52.1 NC_004333.2 + 22441 0.66 0.842867
Target:  5'- cGGCCAUCcu--CGGCG-CGUgcgGCGCa -3'
miRNA:   3'- -CCGGUAGaccuGUCGUuGCGaa-UGCG- -5'
17159 5' -52.1 NC_004333.2 + 33441 0.66 0.842867
Target:  5'- cGCgAUC-GGGCAGCAGgCGUUccacgacgGCGCg -3'
miRNA:   3'- cCGgUAGaCCUGUCGUU-GCGAa-------UGCG- -5'
17159 5' -52.1 NC_004333.2 + 13584 0.66 0.833768
Target:  5'- aGCaCGUC-GGACGGCGACcaGCUgaaGCa -3'
miRNA:   3'- cCG-GUAGaCCUGUCGUUG--CGAaugCG- -5'
17159 5' -52.1 NC_004333.2 + 23221 0.66 0.833768
Target:  5'- cGCCGUCUuGAucaCGGCGGCGa--ACGCg -3'
miRNA:   3'- cCGGUAGAcCU---GUCGUUGCgaaUGCG- -5'
17159 5' -52.1 NC_004333.2 + 4990 0.66 0.833768
Target:  5'- cGGCgCGauguUUUGGAUGGCGACG---GCGCa -3'
miRNA:   3'- -CCG-GU----AGACCUGUCGUUGCgaaUGCG- -5'
17159 5' -52.1 NC_004333.2 + 9616 0.66 0.83192
Target:  5'- cGGCCGguugcgcaccggCUGc-CGGCGGCGCgccUGCGCc -3'
miRNA:   3'- -CCGGUa-----------GACcuGUCGUUGCGa--AUGCG- -5'
17159 5' -52.1 NC_004333.2 + 28992 0.66 0.824442
Target:  5'- cGGCCGcCgGGuCGGCGuGCGCaucGCGCg -3'
miRNA:   3'- -CCGGUaGaCCuGUCGU-UGCGaa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.