miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17160 3' -55.3 NC_004333.2 + 20581 0.66 0.696256
Target:  5'- aGCgGCGCGGcggCGGCCGgcagcggUUGCgCGGc -3'
miRNA:   3'- gCG-CGCGUCua-GCCGGUa------AACGaGCU- -5'
17160 3' -55.3 NC_004333.2 + 230 0.66 0.696256
Target:  5'- uGUGCGuCGGGUCGccccacGCCGUgccGUUCGAu -3'
miRNA:   3'- gCGCGC-GUCUAGC------CGGUAaa-CGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 38227 0.66 0.696256
Target:  5'- gGCGUGCcaAGAUcggCGGCCGggucgGCgUCGAa -3'
miRNA:   3'- gCGCGCG--UCUA---GCCGGUaaa--CG-AGCU- -5'
17160 3' -55.3 NC_004333.2 + 37569 0.66 0.696256
Target:  5'- gGC-CGUGGccggCGGCCcaUUGCUCGAu -3'
miRNA:   3'- gCGcGCGUCua--GCCGGuaAACGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 31367 0.66 0.692965
Target:  5'- gCGUcgGCGCAGGUgCGGCCGgucucgccggcauggUGCUUGc -3'
miRNA:   3'- -GCG--CGCGUCUA-GCCGGUaa-------------ACGAGCu -5'
17160 3' -55.3 NC_004333.2 + 15883 0.66 0.685268
Target:  5'- aCGUGCGCAGGcgUCGGCgCGaucgaacGCUuCGAg -3'
miRNA:   3'- -GCGCGCGUCU--AGCCG-GUaaa----CGA-GCU- -5'
17160 3' -55.3 NC_004333.2 + 31712 0.66 0.685268
Target:  5'- -uCGaGCAGAUCGGCCGacUGUUCa- -3'
miRNA:   3'- gcGCgCGUCUAGCCGGUaaACGAGcu -5'
17160 3' -55.3 NC_004333.2 + 44602 0.66 0.680858
Target:  5'- uGCGCGCGaagugcucgggguGAUCGGCCggcguccaguccggGUUcGCUgCGAu -3'
miRNA:   3'- gCGCGCGU-------------CUAGCCGG--------------UAAaCGA-GCU- -5'
17160 3' -55.3 NC_004333.2 + 37699 0.66 0.674229
Target:  5'- gGCGCGUGG--CGGCUcaAUggccUGCUCGAu -3'
miRNA:   3'- gCGCGCGUCuaGCCGG--UAa---ACGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 8962 0.66 0.674229
Target:  5'- gCGUGCGCGGGcuggaucgUgGGCCGUgcGCggcggCGAc -3'
miRNA:   3'- -GCGCGCGUCU--------AgCCGGUAaaCGa----GCU- -5'
17160 3' -55.3 NC_004333.2 + 6821 0.66 0.674229
Target:  5'- gGCGCGCgaccGGggC-GCCGUggcGCUCGAa -3'
miRNA:   3'- gCGCGCG----UCuaGcCGGUAaa-CGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 33379 0.66 0.663149
Target:  5'- gGCGCGCcGGUUGGCUcgaUGCggcCGAc -3'
miRNA:   3'- gCGCGCGuCUAGCCGGuaaACGa--GCU- -5'
17160 3' -55.3 NC_004333.2 + 39276 0.66 0.663149
Target:  5'- aCGCGCGCGcGAUCgcaGGUUGgcUGCUCa- -3'
miRNA:   3'- -GCGCGCGU-CUAG---CCGGUaaACGAGcu -5'
17160 3' -55.3 NC_004333.2 + 6853 0.66 0.65204
Target:  5'- gGCGCGCugucguaugcGAUCGGCUAc---CUCGAg -3'
miRNA:   3'- gCGCGCGu---------CUAGCCGGUaaacGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 39129 0.66 0.65204
Target:  5'- uGCGCGaCGGcAUCGGCU---UGC-CGAu -3'
miRNA:   3'- gCGCGC-GUC-UAGCCGGuaaACGaGCU- -5'
17160 3' -55.3 NC_004333.2 + 40846 0.66 0.65204
Target:  5'- aCGCGUGCcug-CGGCCAggUcugcgcgaugcGCUCGAu -3'
miRNA:   3'- -GCGCGCGucuaGCCGGUaaA-----------CGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 4671 0.66 0.650927
Target:  5'- gGCGCGCgggucuuucuucaGGAUCGaGCCAUcggcgagcuucUUGC-CGGa -3'
miRNA:   3'- gCGCGCG-------------UCUAGC-CGGUA-----------AACGaGCU- -5'
17160 3' -55.3 NC_004333.2 + 44961 0.66 0.640911
Target:  5'- gCGCGCGCAcGUCGGCg----GC-CGAc -3'
miRNA:   3'- -GCGCGCGUcUAGCCGguaaaCGaGCU- -5'
17160 3' -55.3 NC_004333.2 + 41438 0.66 0.640911
Target:  5'- aGUGCuuGCGG-UCGGgCGcgUGCUCGAg -3'
miRNA:   3'- gCGCG--CGUCuAGCCgGUaaACGAGCU- -5'
17160 3' -55.3 NC_004333.2 + 29869 0.66 0.640911
Target:  5'- gCGCGCGCGGuagucGUCGGCgAagcgcUGCgCGAu -3'
miRNA:   3'- -GCGCGCGUC-----UAGCCGgUaa---ACGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.