Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17161 | 3' | -59.5 | NC_004333.2 | + | 12464 | 0.66 | 0.464399 |
Target: 5'- cGGCGAcacuGGcgcGCCGgGCGGGgcgcgGGCgGGCg -3' miRNA: 3'- -CCGCU----UCa--CGGCgCGCUCa----CCG-UCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 45435 | 0.66 | 0.464399 |
Target: 5'- cGGCGAcGGcGCauuCGCGAGcaUGGCGGCc -3' miRNA: 3'- -CCGCU-UCaCGgc-GCGCUC--ACCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 30999 | 0.66 | 0.464399 |
Target: 5'- uGCGGGcUGCuCGCGCGguaGGUGcgcuGCAGCUg -3' miRNA: 3'- cCGCUUcACG-GCGCGC---UCAC----CGUCGA- -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 48066 | 0.66 | 0.463413 |
Target: 5'- cGCGAugucgugcugcucGGUGCCGa-CGAGgcgcaGGCGGCa -3' miRNA: 3'- cCGCU-------------UCACGGCgcGCUCa----CCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 20195 | 0.66 | 0.454584 |
Target: 5'- aGGCGGcAGUaaugggcgcgGCuCGCGCuuucGUGGCGGCg -3' miRNA: 3'- -CCGCU-UCA----------CG-GCGCGcu--CACCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 21024 | 0.66 | 0.454584 |
Target: 5'- gGGCGAcgaAGUgGCCGCGC-AGUG-CuGCUc -3' miRNA: 3'- -CCGCU---UCA-CGGCGCGcUCACcGuCGA- -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 46933 | 0.66 | 0.454584 |
Target: 5'- cGCGAAGccUCGCGCGcAGccaaGGCGGCg -3' miRNA: 3'- cCGCUUCacGGCGCGC-UCa---CCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 45128 | 0.66 | 0.454584 |
Target: 5'- gGGCGcg--GCCGCGCG-GUGuuCAGCg -3' miRNA: 3'- -CCGCuucaCGGCGCGCuCACc-GUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 37697 | 0.66 | 0.444882 |
Target: 5'- cGGCGGGaUGUCGCGCGuGacaucauGCAGCa -3' miRNA: 3'- -CCGCUUcACGGCGCGCuCac-----CGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 18903 | 0.66 | 0.435297 |
Target: 5'- uGCGuacUGCCGCGCGGGcuucgauaGCAGCa -3' miRNA: 3'- cCGCuucACGGCGCGCUCac------CGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 13852 | 0.66 | 0.435297 |
Target: 5'- aGUGGAcGUgagcaacuacacGCCGCGCGAGcGGCGcGCg -3' miRNA: 3'- cCGCUU-CA------------CGGCGCGCUCaCCGU-CGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 19945 | 0.66 | 0.425833 |
Target: 5'- gGGCGgcGaGCCGcCGCGAGUGcuuugcccgacuGCGcGCUg -3' miRNA: 3'- -CCGCuuCaCGGC-GCGCUCAC------------CGU-CGA- -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 22913 | 0.66 | 0.416492 |
Target: 5'- cGCGguGcUGCCGCuCGAGuUGuGCAGCg -3' miRNA: 3'- cCGCuuC-ACGGCGcGCUC-AC-CGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 31235 | 0.66 | 0.416492 |
Target: 5'- cGCGAcG-GCCGCGCGGc--GCAGCg -3' miRNA: 3'- cCGCUuCaCGGCGCGCUcacCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 17556 | 0.67 | 0.407278 |
Target: 5'- cGGUcGAGUGCgagcaGCGUGAGcgcGGCGGCc -3' miRNA: 3'- -CCGcUUCACGg----CGCGCUCa--CCGUCGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 22179 | 0.67 | 0.407278 |
Target: 5'- cGGCGgcG-GCCG-GCGgcGGUucGGCGGCUg -3' miRNA: 3'- -CCGCuuCaCGGCgCGC--UCA--CCGUCGA- -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 20641 | 0.67 | 0.407278 |
Target: 5'- cGCGAgcgucgcaacGGcGCUGCGCcAGUGGCAGg- -3' miRNA: 3'- cCGCU----------UCaCGGCGCGcUCACCGUCga -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 46072 | 0.67 | 0.407278 |
Target: 5'- aGGCc--GUGCCagcccucgGCGcCGAGUGGCAGg- -3' miRNA: 3'- -CCGcuuCACGG--------CGC-GCUCACCGUCga -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 42089 | 0.67 | 0.398192 |
Target: 5'- aGCGucGUGCUGCGCGAcGaGGCGugucGCg -3' miRNA: 3'- cCGCuuCACGGCGCGCU-CaCCGU----CGa -5' |
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17161 | 3' | -59.5 | NC_004333.2 | + | 7907 | 0.67 | 0.398192 |
Target: 5'- cGGCGcAG-GCCGCGuCGAucUGGCgAGCg -3' miRNA: 3'- -CCGCuUCaCGGCGC-GCUc-ACCG-UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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