miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17161 3' -59.5 NC_004333.2 + 12464 0.66 0.464399
Target:  5'- cGGCGAcacuGGcgcGCCGgGCGGGgcgcgGGCgGGCg -3'
miRNA:   3'- -CCGCU----UCa--CGGCgCGCUCa----CCG-UCGa -5'
17161 3' -59.5 NC_004333.2 + 45435 0.66 0.464399
Target:  5'- cGGCGAcGGcGCauuCGCGAGcaUGGCGGCc -3'
miRNA:   3'- -CCGCU-UCaCGgc-GCGCUC--ACCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 30999 0.66 0.464399
Target:  5'- uGCGGGcUGCuCGCGCGguaGGUGcgcuGCAGCUg -3'
miRNA:   3'- cCGCUUcACG-GCGCGC---UCAC----CGUCGA- -5'
17161 3' -59.5 NC_004333.2 + 48066 0.66 0.463413
Target:  5'- cGCGAugucgugcugcucGGUGCCGa-CGAGgcgcaGGCGGCa -3'
miRNA:   3'- cCGCU-------------UCACGGCgcGCUCa----CCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 20195 0.66 0.454584
Target:  5'- aGGCGGcAGUaaugggcgcgGCuCGCGCuuucGUGGCGGCg -3'
miRNA:   3'- -CCGCU-UCA----------CG-GCGCGcu--CACCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 21024 0.66 0.454584
Target:  5'- gGGCGAcgaAGUgGCCGCGC-AGUG-CuGCUc -3'
miRNA:   3'- -CCGCU---UCA-CGGCGCGcUCACcGuCGA- -5'
17161 3' -59.5 NC_004333.2 + 46933 0.66 0.454584
Target:  5'- cGCGAAGccUCGCGCGcAGccaaGGCGGCg -3'
miRNA:   3'- cCGCUUCacGGCGCGC-UCa---CCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 45128 0.66 0.454584
Target:  5'- gGGCGcg--GCCGCGCG-GUGuuCAGCg -3'
miRNA:   3'- -CCGCuucaCGGCGCGCuCACc-GUCGa -5'
17161 3' -59.5 NC_004333.2 + 37697 0.66 0.444882
Target:  5'- cGGCGGGaUGUCGCGCGuGacaucauGCAGCa -3'
miRNA:   3'- -CCGCUUcACGGCGCGCuCac-----CGUCGa -5'
17161 3' -59.5 NC_004333.2 + 18903 0.66 0.435297
Target:  5'- uGCGuacUGCCGCGCGGGcuucgauaGCAGCa -3'
miRNA:   3'- cCGCuucACGGCGCGCUCac------CGUCGa -5'
17161 3' -59.5 NC_004333.2 + 13852 0.66 0.435297
Target:  5'- aGUGGAcGUgagcaacuacacGCCGCGCGAGcGGCGcGCg -3'
miRNA:   3'- cCGCUU-CA------------CGGCGCGCUCaCCGU-CGa -5'
17161 3' -59.5 NC_004333.2 + 19945 0.66 0.425833
Target:  5'- gGGCGgcGaGCCGcCGCGAGUGcuuugcccgacuGCGcGCUg -3'
miRNA:   3'- -CCGCuuCaCGGC-GCGCUCAC------------CGU-CGA- -5'
17161 3' -59.5 NC_004333.2 + 22913 0.66 0.416492
Target:  5'- cGCGguGcUGCCGCuCGAGuUGuGCAGCg -3'
miRNA:   3'- cCGCuuC-ACGGCGcGCUC-AC-CGUCGa -5'
17161 3' -59.5 NC_004333.2 + 31235 0.66 0.416492
Target:  5'- cGCGAcG-GCCGCGCGGc--GCAGCg -3'
miRNA:   3'- cCGCUuCaCGGCGCGCUcacCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 17556 0.67 0.407278
Target:  5'- cGGUcGAGUGCgagcaGCGUGAGcgcGGCGGCc -3'
miRNA:   3'- -CCGcUUCACGg----CGCGCUCa--CCGUCGa -5'
17161 3' -59.5 NC_004333.2 + 22179 0.67 0.407278
Target:  5'- cGGCGgcG-GCCG-GCGgcGGUucGGCGGCUg -3'
miRNA:   3'- -CCGCuuCaCGGCgCGC--UCA--CCGUCGA- -5'
17161 3' -59.5 NC_004333.2 + 20641 0.67 0.407278
Target:  5'- cGCGAgcgucgcaacGGcGCUGCGCcAGUGGCAGg- -3'
miRNA:   3'- cCGCU----------UCaCGGCGCGcUCACCGUCga -5'
17161 3' -59.5 NC_004333.2 + 46072 0.67 0.407278
Target:  5'- aGGCc--GUGCCagcccucgGCGcCGAGUGGCAGg- -3'
miRNA:   3'- -CCGcuuCACGG--------CGC-GCUCACCGUCga -5'
17161 3' -59.5 NC_004333.2 + 42089 0.67 0.398192
Target:  5'- aGCGucGUGCUGCGCGAcGaGGCGugucGCg -3'
miRNA:   3'- cCGCuuCACGGCGCGCU-CaCCGU----CGa -5'
17161 3' -59.5 NC_004333.2 + 7907 0.67 0.398192
Target:  5'- cGGCGcAG-GCCGCGuCGAucUGGCgAGCg -3'
miRNA:   3'- -CCGCuUCaCGGCGC-GCUc-ACCG-UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.