miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17161 5' -55 NC_004333.2 + 7236 0.65 0.719842
Target:  5'- cCGaAGGCgGUUUCUCG-CGGCAAcgCCUg -3'
miRNA:   3'- -GC-UCCG-UAAGGAGCuGCCGUUa-GGGu -5'
17161 5' -55 NC_004333.2 + 39307 0.66 0.709015
Target:  5'- cCGGGGCuggcagccgAUUCgCUCGGCGGCGGcgcgcUUCUAc -3'
miRNA:   3'- -GCUCCG---------UAAG-GAGCUGCCGUU-----AGGGU- -5'
17161 5' -55 NC_004333.2 + 45101 0.66 0.698111
Target:  5'- gCGAGGCGauaCUCGacgccugucugcGCGGCGAUCgCGc -3'
miRNA:   3'- -GCUCCGUaagGAGC------------UGCCGUUAGgGU- -5'
17161 5' -55 NC_004333.2 + 22500 0.66 0.676118
Target:  5'- ---cGCGUUCCUCGGCGGUcuGAUCg-- -3'
miRNA:   3'- gcucCGUAAGGAGCUGCCG--UUAGggu -5'
17161 5' -55 NC_004333.2 + 18474 0.66 0.676118
Target:  5'- gCGAGGCGUugcgCUUCgGACGGCAcgagcaugAUgCCGg -3'
miRNA:   3'- -GCUCCGUAa---GGAG-CUGCCGU--------UAgGGU- -5'
17161 5' -55 NC_004333.2 + 20023 0.66 0.676118
Target:  5'- -cGGGCAaagCaCUCGACGGCGGcucgccgCCCGg -3'
miRNA:   3'- gcUCCGUaa-G-GAGCUGCCGUUa------GGGU- -5'
17161 5' -55 NC_004333.2 + 18764 0.67 0.640612
Target:  5'- aCGAGGCGggCgUCGguucagaACGGUAuaucagcGUCCCAa -3'
miRNA:   3'- -GCUCCGUaaGgAGC-------UGCCGU-------UAGGGU- -5'
17161 5' -55 NC_004333.2 + 24105 0.67 0.620582
Target:  5'- uGAGcGCGUUgaUCGACGGaCAGUCgCAg -3'
miRNA:   3'- gCUC-CGUAAggAGCUGCC-GUUAGgGU- -5'
17161 5' -55 NC_004333.2 + 14999 0.69 0.490375
Target:  5'- aGAGGCGc-UCUCGGCGGUcGUCCa- -3'
miRNA:   3'- gCUCCGUaaGGAGCUGCCGuUAGGgu -5'
17161 5' -55 NC_004333.2 + 32100 0.7 0.480035
Target:  5'- uCGGcGCGUUCagUGACGGCAGUUCCGa -3'
miRNA:   3'- -GCUcCGUAAGgaGCUGCCGUUAGGGU- -5'
17161 5' -55 NC_004333.2 + 33430 0.74 0.264333
Target:  5'- aGcAGGCGUUCCaCGACGGCGcgCCg- -3'
miRNA:   3'- gC-UCCGUAAGGaGCUGCCGUuaGGgu -5'
17161 5' -55 NC_004333.2 + 21819 1.08 0.001009
Target:  5'- uCGAGGCAUUCCUCGACGGCAAUCCCAu -3'
miRNA:   3'- -GCUCCGUAAGGAGCUGCCGUUAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.