miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17162 3' -56.5 NC_004333.2 + 13895 0.66 0.626882
Target:  5'- gGCCGGcACGGGCUGCGcGGcGGCu-- -3'
miRNA:   3'- -CGGCUcUGCCCGGCGUuUCuCUGcaa -5'
17162 3' -56.5 NC_004333.2 + 47619 0.66 0.593774
Target:  5'- cGCCGAGAUGGGCgGC------ACGUUc -3'
miRNA:   3'- -CGGCUCUGCCCGgCGuuucucUGCAA- -5'
17162 3' -56.5 NC_004333.2 + 8421 0.66 0.593774
Target:  5'- cGCCGAuACGGuGCCGCc----GACGUUg -3'
miRNA:   3'- -CGGCUcUGCC-CGGCGuuucuCUGCAA- -5'
17162 3' -56.5 NC_004333.2 + 45953 0.66 0.582792
Target:  5'- cGUCGAG-CGGauguGUCGCGgcGAGGCGUg -3'
miRNA:   3'- -CGGCUCuGCC----CGGCGUuuCUCUGCAa -5'
17162 3' -56.5 NC_004333.2 + 2749 0.66 0.582792
Target:  5'- aGCCGAGAuCGcGGCCGCcgugccGGucGCGUUc -3'
miRNA:   3'- -CGGCUCU-GC-CCGGCGuu----UCucUGCAA- -5'
17162 3' -56.5 NC_004333.2 + 23441 0.66 0.582792
Target:  5'- uCCGGacuGACGGGCgGCAcGGuGACGc- -3'
miRNA:   3'- cGGCU---CUGCCCGgCGUuUCuCUGCaa -5'
17162 3' -56.5 NC_004333.2 + 43261 0.66 0.57185
Target:  5'- uGCCaguGAGACgGGGgCGCAAGG-GGCGc- -3'
miRNA:   3'- -CGG---CUCUG-CCCgGCGUUUCuCUGCaa -5'
17162 3' -56.5 NC_004333.2 + 2905 0.67 0.550125
Target:  5'- gGCCGAGACGuGCUGCGcAGcGGuCGUg -3'
miRNA:   3'- -CGGCUCUGCcCGGCGUuUC-UCuGCAa -5'
17162 3' -56.5 NC_004333.2 + 32918 0.67 0.518045
Target:  5'- cCCGcGACGGuGCCGCGAcaaauggcagcaGGuAGGCGUg -3'
miRNA:   3'- cGGCuCUGCC-CGGCGUU------------UC-UCUGCAa -5'
17162 3' -56.5 NC_004333.2 + 38064 0.67 0.507514
Target:  5'- aGCCGAGcgacGCGGGCaguGCuuGGAGaAUGUUc -3'
miRNA:   3'- -CGGCUC----UGCCCGg--CGuuUCUC-UGCAA- -5'
17162 3' -56.5 NC_004333.2 + 25245 0.68 0.486735
Target:  5'- uUCGAGACGcGGCgGCAGGcGAG-CGUg -3'
miRNA:   3'- cGGCUCUGC-CCGgCGUUU-CUCuGCAa -5'
17162 3' -56.5 NC_004333.2 + 22928 0.69 0.398826
Target:  5'- cGCCGAucGcCGGGCCGCAAcaaaauccGGGCGUa -3'
miRNA:   3'- -CGGCU--CuGCCCGGCGUUuc------UCUGCAa -5'
17162 3' -56.5 NC_004333.2 + 12450 0.69 0.398826
Target:  5'- cGCCG-GGCGGGgCGCGGGcGGGCGc- -3'
miRNA:   3'- -CGGCuCUGCCCgGCGUUUcUCUGCaa -5'
17162 3' -56.5 NC_004333.2 + 42730 0.72 0.276878
Target:  5'- cGCUGuuGCGGGCUGCucgacGGGAGACGc- -3'
miRNA:   3'- -CGGCucUGCCCGGCGu----UUCUCUGCaa -5'
17162 3' -56.5 NC_004333.2 + 22221 1.06 0.00095
Target:  5'- uGCCGAGACGGGCCGCAAAGAGACGUUc -3'
miRNA:   3'- -CGGCUCUGCCCGGCGUUUCUCUGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.