miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17162 5' -57 NC_004333.2 + 35941 0.66 0.567238
Target:  5'- -aGUCGUcaugaGCGCgaUCUGCGCauuCAAGCCGu -3'
miRNA:   3'- acUAGCA-----CGCG--AGACGCG---GUUCGGUc -5'
17162 5' -57 NC_004333.2 + 15787 0.66 0.566142
Target:  5'- aGGUCGUgaucgaucucgaaGCGUUCgaucGCGCCGAcGCCu- -3'
miRNA:   3'- aCUAGCA-------------CGCGAGa---CGCGGUU-CGGuc -5'
17162 5' -57 NC_004333.2 + 13517 0.66 0.557398
Target:  5'- cUGGUCGccguccgacGUGCUCgcggcguugccgccgGCgGCCAGGCCGGa -3'
miRNA:   3'- -ACUAGCa--------CGCGAGa--------------CG-CGGUUCGGUC- -5'
17162 5' -57 NC_004333.2 + 9184 0.66 0.556308
Target:  5'- gUGcUCGgcggcgacauUGCGCUCgacaGCG-CAAGCCAGa -3'
miRNA:   3'- -ACuAGC----------ACGCGAGa---CGCgGUUCGGUC- -5'
17162 5' -57 NC_004333.2 + 42288 0.66 0.556308
Target:  5'- -cGUCGUGCGgUCgaaGUCGAGCCGc -3'
miRNA:   3'- acUAGCACGCgAGacgCGGUUCGGUc -5'
17162 5' -57 NC_004333.2 + 19650 0.66 0.54544
Target:  5'- uUGAUCGcGCGCgauuccccUUGUGCCGcGCCGa -3'
miRNA:   3'- -ACUAGCaCGCGa-------GACGCGGUuCGGUc -5'
17162 5' -57 NC_004333.2 + 22059 0.66 0.54544
Target:  5'- aGAUCGUgcacgGCGCguaGCGCCAGGaaagaggcgcCCAGg -3'
miRNA:   3'- aCUAGCA-----CGCGagaCGCGGUUC----------GGUC- -5'
17162 5' -57 NC_004333.2 + 14237 0.66 0.54544
Target:  5'- cGAcggCGUGCGCgc-GCGCCucuuucGAGCCGa -3'
miRNA:   3'- aCUa--GCACGCGagaCGCGG------UUCGGUc -5'
17162 5' -57 NC_004333.2 + 13456 0.67 0.51328
Target:  5'- cGGUCGUGCGCaCcGCGUCGcgaauGCgCAGg -3'
miRNA:   3'- aCUAGCACGCGaGaCGCGGUu----CG-GUC- -5'
17162 5' -57 NC_004333.2 + 24974 0.67 0.51328
Target:  5'- uUGAUCGcgaGCGCaacgUCUGCGuCCGcGCCGc -3'
miRNA:   3'- -ACUAGCa--CGCG----AGACGC-GGUuCGGUc -5'
17162 5' -57 NC_004333.2 + 43233 0.67 0.51328
Target:  5'- ---cCGUGCGUUCgcaugcccGCGCCGcaucuGCCAGu -3'
miRNA:   3'- acuaGCACGCGAGa-------CGCGGUu----CGGUC- -5'
17162 5' -57 NC_004333.2 + 45798 0.67 0.51328
Target:  5'- cGAUCGgcaCGUUC-GCGCCGGGCUcgAGa -3'
miRNA:   3'- aCUAGCac-GCGAGaCGCGGUUCGG--UC- -5'
17162 5' -57 NC_004333.2 + 1862 0.67 0.51328
Target:  5'- -uGUCGUGCgGUUCUgacGCGCCuGGCcCGGa -3'
miRNA:   3'- acUAGCACG-CGAGA---CGCGGuUCG-GUC- -5'
17162 5' -57 NC_004333.2 + 8952 0.67 0.492277
Target:  5'- aGAUCaagGUGCGCggCUaaccGCGCCGcAGCCGc -3'
miRNA:   3'- aCUAG---CACGCGa-GA----CGCGGU-UCGGUc -5'
17162 5' -57 NC_004333.2 + 42106 0.67 0.492277
Target:  5'- cGAggCGUGuCGCgaggUGCGCCAGuuGCCGGu -3'
miRNA:   3'- aCUa-GCAC-GCGag--ACGCGGUU--CGGUC- -5'
17162 5' -57 NC_004333.2 + 11097 0.67 0.492277
Target:  5'- aUGAUCGUGCGCgacgaacagCgGCacgaaaucGCCucGCCGGg -3'
miRNA:   3'- -ACUAGCACGCGa--------GaCG--------CGGuuCGGUC- -5'
17162 5' -57 NC_004333.2 + 3285 0.67 0.481925
Target:  5'- -cAUCGggGCGggCggcGCGCCGGGCCGGc -3'
miRNA:   3'- acUAGCa-CGCgaGa--CGCGGUUCGGUC- -5'
17162 5' -57 NC_004333.2 + 11986 0.67 0.481925
Target:  5'- gGcgCGcGCGCcgCUGCGCau-GCCGGg -3'
miRNA:   3'- aCuaGCaCGCGa-GACGCGguuCGGUC- -5'
17162 5' -57 NC_004333.2 + 20441 0.68 0.451526
Target:  5'- cGuUCGgcgGCGCgaagcCUGCGCCGgucgugacgcAGCCGGu -3'
miRNA:   3'- aCuAGCa--CGCGa----GACGCGGU----------UCGGUC- -5'
17162 5' -57 NC_004333.2 + 41641 0.68 0.451526
Target:  5'- aGAUUGUcggGCGCgggCUGCGgCCGuacGCCGGc -3'
miRNA:   3'- aCUAGCA---CGCGa--GACGC-GGUu--CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.