miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17164 3' -56.2 NC_004333.2 + 8725 0.66 0.667894
Target:  5'- aCCGUCacgagcaaGCCGGGCGcCG--CGCCGAGCu -3'
miRNA:   3'- -GGCGG--------CGGCUCGUaGUagGUGGUUCG- -5'
17164 3' -56.2 NC_004333.2 + 17013 0.66 0.667894
Target:  5'- gCCGUCGCCGcGCucgacUCGUgCACgcugCAGGCc -3'
miRNA:   3'- -GGCGGCGGCuCGu----AGUAgGUG----GUUCG- -5'
17164 3' -56.2 NC_004333.2 + 31313 0.66 0.667894
Target:  5'- gCCGaCGCCGAGCAcggCGcCCGCaauGCc -3'
miRNA:   3'- -GGCgGCGGCUCGUa--GUaGGUGguuCG- -5'
17164 3' -56.2 NC_004333.2 + 25184 0.66 0.667894
Target:  5'- gCGCCGCCGuGC-UCG-CCguGCCcgGAGUg -3'
miRNA:   3'- gGCGGCGGCuCGuAGUaGG--UGG--UUCG- -5'
17164 3' -56.2 NC_004333.2 + 45485 0.66 0.667894
Target:  5'- gCCGCCGCCGAaac-CGagUGCCAGGUc -3'
miRNA:   3'- -GGCGGCGGCUcguaGUagGUGGUUCG- -5'
17164 3' -56.2 NC_004333.2 + 19794 0.66 0.667894
Target:  5'- gCGCCGUCuuGCA-CG-CCACCA-GCg -3'
miRNA:   3'- gGCGGCGGcuCGUaGUaGGUGGUuCG- -5'
17164 3' -56.2 NC_004333.2 + 15976 0.66 0.667894
Target:  5'- aCCGUgGgCGGucGCAUCGUCUACgauGGCg -3'
miRNA:   3'- -GGCGgCgGCU--CGUAGUAGGUGgu-UCG- -5'
17164 3' -56.2 NC_004333.2 + 13833 0.66 0.661332
Target:  5'- aCGCCGCgCGAGCGgcgcgcggCGUCCuacgcGCUcgacuucaacggcacGAGCa -3'
miRNA:   3'- gGCGGCG-GCUCGUa-------GUAGG-----UGG---------------UUCG- -5'
17164 3' -56.2 NC_004333.2 + 38709 0.66 0.656953
Target:  5'- gUGCCGcCCGGGCcgAUCAgaacgggCACCAcgGGCa -3'
miRNA:   3'- gGCGGC-GGCUCG--UAGUag-----GUGGU--UCG- -5'
17164 3' -56.2 NC_004333.2 + 38156 0.66 0.656953
Target:  5'- cCCgGCCGCCGAucuuggcacgccGCucgCAauggCCGCCGAGa -3'
miRNA:   3'- -GG-CGGCGGCU------------CGua-GUa---GGUGGUUCg -5'
17164 3' -56.2 NC_004333.2 + 22611 0.66 0.656953
Target:  5'- gCGuCCGUCGGGU-UCGUCgCGCCuguGCg -3'
miRNA:   3'- gGC-GGCGGCUCGuAGUAG-GUGGuu-CG- -5'
17164 3' -56.2 NC_004333.2 + 25229 0.66 0.656953
Target:  5'- aCGCUGCCGuucGGguUCGaaaUGCCGAGCc -3'
miRNA:   3'- gGCGGCGGC---UCguAGUag-GUGGUUCG- -5'
17164 3' -56.2 NC_004333.2 + 20546 0.66 0.653665
Target:  5'- -aGCCGCCGGgacgcuaaccggcuGCGUCA-CgACCGGcGCa -3'
miRNA:   3'- ggCGGCGGCU--------------CGUAGUaGgUGGUU-CG- -5'
17164 3' -56.2 NC_004333.2 + 37644 0.66 0.652569
Target:  5'- cCCGCCGgaucagacauucaUCGAGCGcgcgcccgacccgcUCGUCgGCCGgcccGGCg -3'
miRNA:   3'- -GGCGGC-------------GGCUCGU--------------AGUAGgUGGU----UCG- -5'
17164 3' -56.2 NC_004333.2 + 13226 0.66 0.645988
Target:  5'- uUCGgUGCCGA---UCAUCCACCAcGUc -3'
miRNA:   3'- -GGCgGCGGCUcguAGUAGGUGGUuCG- -5'
17164 3' -56.2 NC_004333.2 + 11065 0.66 0.645988
Target:  5'- cUCGaCCGCCGGGCGUgCggCCcauuCCGGGa -3'
miRNA:   3'- -GGC-GGCGGCUCGUA-GuaGGu---GGUUCg -5'
17164 3' -56.2 NC_004333.2 + 13520 0.66 0.645988
Target:  5'- gUCGCCGuCCGAcgugcucgcgGCGUUG-CCGCCGgcGGCc -3'
miRNA:   3'- -GGCGGC-GGCU----------CGUAGUaGGUGGU--UCG- -5'
17164 3' -56.2 NC_004333.2 + 27663 0.66 0.645988
Target:  5'- gCGCCGCgcuauucgacguCGGGCAUCAccUUUACUucGCu -3'
miRNA:   3'- gGCGGCG------------GCUCGUAGU--AGGUGGuuCG- -5'
17164 3' -56.2 NC_004333.2 + 26136 0.66 0.645988
Target:  5'- gCGCCGCCGcuGCggCG-CCACU-GGCa -3'
miRNA:   3'- gGCGGCGGCu-CGuaGUaGGUGGuUCG- -5'
17164 3' -56.2 NC_004333.2 + 30944 0.66 0.645988
Target:  5'- gUCGauGCgCGAGaCGUCGgaggagaaCCGCCAGGCg -3'
miRNA:   3'- -GGCggCG-GCUC-GUAGUa-------GGUGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.