miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17164 5' -52.3 NC_004333.2 + 15840 0.65 0.862678
Target:  5'- aCGACCUgcugaagucgcgacGGUUCGGuCGCuaCGUgGAAGg -3'
miRNA:   3'- -GCUGGA--------------CCAAGUU-GCGcgGCAaCUUC- -5'
17164 5' -52.3 NC_004333.2 + 16664 0.66 0.848104
Target:  5'- uCGACCUgcccGGUgcugCAcCGCGCgGUgcgGAAGc -3'
miRNA:   3'- -GCUGGA----CCAa---GUuGCGCGgCAa--CUUC- -5'
17164 5' -52.3 NC_004333.2 + 39744 0.66 0.846344
Target:  5'- cCGACCaGGa--AGCGCGCCGccucggcgaccgUGAAGu -3'
miRNA:   3'- -GCUGGaCCaagUUGCGCGGCa-----------ACUUC- -5'
17164 5' -52.3 NC_004333.2 + 7173 0.68 0.760694
Target:  5'- aCGAUUUGGUUCGACGCGauaUGUa---- -3'
miRNA:   3'- -GCUGGACCAAGUUGCGCg--GCAacuuc -5'
17164 5' -52.3 NC_004333.2 + 45072 0.68 0.760694
Target:  5'- gCGGCC-GGa-CAGCGCGCCGUgguAGa -3'
miRNA:   3'- -GCUGGaCCaaGUUGCGCGGCAacuUC- -5'
17164 5' -52.3 NC_004333.2 + 28085 0.69 0.695677
Target:  5'- gCGAUCUGGUUCAuCGUGUCGa----- -3'
miRNA:   3'- -GCUGGACCAAGUuGCGCGGCaacuuc -5'
17164 5' -52.3 NC_004333.2 + 11274 0.69 0.683427
Target:  5'- aGGCC-GaGUUCGcguugccGCGCGCUGUUGAAc -3'
miRNA:   3'- gCUGGaC-CAAGU-------UGCGCGGCAACUUc -5'
17164 5' -52.3 NC_004333.2 + 35990 0.7 0.628318
Target:  5'- gCGACCUGGUUCG-CGguCGCC-UUGAu- -3'
miRNA:   3'- -GCUGGACCAAGUuGC--GCGGcAACUuc -5'
17164 5' -52.3 NC_004333.2 + 6670 0.7 0.61704
Target:  5'- gCGGCgCUGGg-CGGCGCGCCG-UGgcGg -3'
miRNA:   3'- -GCUG-GACCaaGUUGCGCGGCaACuuC- -5'
17164 5' -52.3 NC_004333.2 + 41565 0.74 0.377544
Target:  5'- aCGACC-GGcUUCAACGCGCCauucGUUGAc- -3'
miRNA:   3'- -GCUGGaCC-AAGUUGCGCGG----CAACUuc -5'
17164 5' -52.3 NC_004333.2 + 3178 0.77 0.258643
Target:  5'- aGAaCUGGUUCGGCGCGCUGUcGAAc -3'
miRNA:   3'- gCUgGACCAAGUUGCGCGGCAaCUUc -5'
17164 5' -52.3 NC_004333.2 + 23621 1.09 0.001897
Target:  5'- gCGACCUGGUUCAACGCGCCGUUGAAGu -3'
miRNA:   3'- -GCUGGACCAAGUUGCGCGGCAACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.