Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17165 | 3' | -54.1 | NC_004333.2 | + | 43137 | 0.69 | 0.636914 |
Target: 5'- gGCCGACGGaa--GUugUCGGGaUCGUGUc -3' miRNA: 3'- -UGGCUGCUgcugCA--AGCCCaAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 6654 | 0.69 | 0.636914 |
Target: 5'- cGCCGugG-CGGCGaugCGGGcuUUCGcGCg -3' miRNA: 3'- -UGGCugCuGCUGCaa-GCCC--AAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 31541 | 0.69 | 0.636914 |
Target: 5'- uUCGuCGACGAUGUUUGcGUUCGcgGCg -3' miRNA: 3'- uGGCuGCUGCUGCAAGCcCAAGCa-CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 30749 | 0.69 | 0.625941 |
Target: 5'- cGCCGGCGGCGGCGcgaaCGGcUUCaugaagGUGCu -3' miRNA: 3'- -UGGCUGCUGCUGCaa--GCCcAAG------CACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 9790 | 0.69 | 0.625941 |
Target: 5'- cGCCGACG-CGGCGuUUCGcGaaccgCGUGCg -3' miRNA: 3'- -UGGCUGCuGCUGC-AAGC-Ccaa--GCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 42697 | 0.69 | 0.614974 |
Target: 5'- cGCCGGcCGACGAgCGggCGGcGUUCGa-- -3' miRNA: 3'- -UGGCU-GCUGCU-GCaaGCC-CAAGCacg -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 44577 | 0.7 | 0.582198 |
Target: 5'- gGCCGGCGuCca-GUcCGGGUUCGcUGCg -3' miRNA: 3'- -UGGCUGCuGcugCAaGCCCAAGC-ACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 2694 | 0.7 | 0.542306 |
Target: 5'- cGCCGGCGGCGGCcgacaggccgaucucG-UCGGcgaaguuGUUCGUGCc -3' miRNA: 3'- -UGGCUGCUGCUG---------------CaAGCC-------CAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 8700 | 0.71 | 0.517963 |
Target: 5'- cGCCGAgcuCGACGuCGcgcaUCGGcUUCGUGCa -3' miRNA: 3'- -UGGCU---GCUGCuGCa---AGCCcAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 23499 | 0.71 | 0.507514 |
Target: 5'- gACCGAucCGGcCGGCGg-CGGGUaCGUGCc -3' miRNA: 3'- -UGGCU--GCU-GCUGCaaGCCCAaGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 10908 | 0.71 | 0.486894 |
Target: 5'- cGCCGACGACaguGCGUUCucGGUUCucaugccgGUGCg -3' miRNA: 3'- -UGGCUGCUGc--UGCAAGc-CCAAG--------CACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 37744 | 0.71 | 0.476732 |
Target: 5'- gGCCGGcCGACGAgCGggUCGGGcgCGcGCu -3' miRNA: 3'- -UGGCU-GCUGCU-GCa-AGCCCaaGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 18169 | 0.72 | 0.466678 |
Target: 5'- aGCCGAuUGcCGGCGUgcCGGGUgaugcgcucgUCGUGCg -3' miRNA: 3'- -UGGCU-GCuGCUGCAa-GCCCA----------AGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 25425 | 0.72 | 0.446905 |
Target: 5'- uGCCGGCGGCGGcCGUcacgcCGGG--CGUGCc -3' miRNA: 3'- -UGGCUGCUGCU-GCAa----GCCCaaGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 40779 | 0.72 | 0.437195 |
Target: 5'- cGCCGgugACGaucGCGGCGaUCGGGUUgGUGUu -3' miRNA: 3'- -UGGC---UGC---UGCUGCaAGCCCAAgCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 8999 | 0.73 | 0.418144 |
Target: 5'- gACCGACG-CGGCGUUCGcGGcUUGccagGCg -3' miRNA: 3'- -UGGCUGCuGCUGCAAGC-CCaAGCa---CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 11222 | 0.73 | 0.399608 |
Target: 5'- cAUCGACuuCGGgGauaaaUUCGGGUUCGUGCu -3' miRNA: 3'- -UGGCUGcuGCUgC-----AAGCCCAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22176 | 0.73 | 0.390539 |
Target: 5'- cGCCGGCGGCGGCcggCGgcGGUUCG-GCg -3' miRNA: 3'- -UGGCUGCUGCUGcaaGC--CCAAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 7760 | 0.77 | 0.226559 |
Target: 5'- cACCGcuACGACGcCGUggUCGGGUUCGccgGCa -3' miRNA: 3'- -UGGC--UGCUGCuGCA--AGCCCAAGCa--CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 25221 | 0.77 | 0.220698 |
Target: 5'- cGCCcGCGACGcugcCGUUCGGGUUCGaaaUGCc -3' miRNA: 3'- -UGGcUGCUGCu---GCAAGCCCAAGC---ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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