miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17165 5' -57.3 NC_004333.2 + 23521 0.66 0.590396
Target:  5'- aUGCGGucaaccccgAuacgucgaccgauccGGCCG-GCGGCGgGUACGUg -3'
miRNA:   3'- cACGCC---------U---------------UCGGCuUGCCGCgCAUGCA- -5'
17165 5' -57.3 NC_004333.2 + 11705 0.66 0.586043
Target:  5'- -cGCaGc-GCCGGGCGGCGUGcugGCGUc -3'
miRNA:   3'- caCGcCuuCGGCUUGCCGCGCa--UGCA- -5'
17165 5' -57.3 NC_004333.2 + 38946 0.66 0.575189
Target:  5'- -cGCGGguGCgCGGACgGGCGgCGUuCGUa -3'
miRNA:   3'- caCGCCuuCG-GCUUG-CCGC-GCAuGCA- -5'
17165 5' -57.3 NC_004333.2 + 18806 0.66 0.575189
Target:  5'- -cGCGc-GGCCGcAgGGCGCGUGCu- -3'
miRNA:   3'- caCGCcuUCGGCuUgCCGCGCAUGca -5'
17165 5' -57.3 NC_004333.2 + 5045 0.66 0.575189
Target:  5'- -gGCGGccggcuguuGGCCGAcguCGGCGCG-GCGc -3'
miRNA:   3'- caCGCCu--------UCGGCUu--GCCGCGCaUGCa -5'
17165 5' -57.3 NC_004333.2 + 19972 0.66 0.568698
Target:  5'- aUGCGGAcGGCgCGGAUGGCccagagcugcugagcGCGgGCGUa -3'
miRNA:   3'- cACGCCU-UCG-GCUUGCCG---------------CGCaUGCA- -5'
17165 5' -57.3 NC_004333.2 + 2758 0.66 0.564381
Target:  5'- -cGCGGccGCCGugcCGGuCGCGUuCGUc -3'
miRNA:   3'- caCGCCuuCGGCuu-GCC-GCGCAuGCA- -5'
17165 5' -57.3 NC_004333.2 + 39311 0.66 0.553627
Target:  5'- -gGCuGGcAGCCGAuucgcucggcgGCGGCGCGcuucUACGa -3'
miRNA:   3'- caCG-CCuUCGGCU-----------UGCCGCGC----AUGCa -5'
17165 5' -57.3 NC_004333.2 + 15506 0.66 0.553627
Target:  5'- -cGCGGcGGUCaccGGCGGCGCGUcaaGCGc -3'
miRNA:   3'- caCGCCuUCGGc--UUGCCGCGCA---UGCa -5'
17165 5' -57.3 NC_004333.2 + 14243 0.66 0.553627
Target:  5'- cGUGCGcGcgcgccucuuucGAGCCGAGCGGCG-GcACGc -3'
miRNA:   3'- -CACGC-C------------UUCGGCUUGCCGCgCaUGCa -5'
17165 5' -57.3 NC_004333.2 + 44403 0.66 0.551483
Target:  5'- -nGCGGuacaacggccuGCCGGGCucgcuggcuGGUGCGUGCGa -3'
miRNA:   3'- caCGCCuu---------CGGCUUG---------CCGCGCAUGCa -5'
17165 5' -57.3 NC_004333.2 + 9558 0.66 0.542935
Target:  5'- cUGCaGAAGCuCGAgcagcucgGCGGCG-GUGCGg -3'
miRNA:   3'- cACGcCUUCG-GCU--------UGCCGCgCAUGCa -5'
17165 5' -57.3 NC_004333.2 + 18833 0.66 0.542935
Target:  5'- -gGCGGGaaggggAGCCGcAACGuGCGCGUGu-- -3'
miRNA:   3'- caCGCCU------UCGGC-UUGC-CGCGCAUgca -5'
17165 5' -57.3 NC_004333.2 + 20329 0.66 0.542935
Target:  5'- aUGaaGGAGUCGAuguGCGGCGCG-AUGUa -3'
miRNA:   3'- cACgcCUUCGGCU---UGCCGCGCaUGCA- -5'
17165 5' -57.3 NC_004333.2 + 29442 0.67 0.532311
Target:  5'- -cGCGGGcgacgAGCCGcuugaaGuGCGCGUGCGa -3'
miRNA:   3'- caCGCCU-----UCGGCuug---C-CGCGCAUGCa -5'
17165 5' -57.3 NC_004333.2 + 47801 0.67 0.532311
Target:  5'- gGUGUacGAGGCC--ACGGCGCGcgACGUg -3'
miRNA:   3'- -CACGc-CUUCGGcuUGCCGCGCa-UGCA- -5'
17165 5' -57.3 NC_004333.2 + 46996 0.67 0.532311
Target:  5'- -cGCGcGAGGCUucGCGGCGCucGCGg -3'
miRNA:   3'- caCGC-CUUCGGcuUGCCGCGcaUGCa -5'
17165 5' -57.3 NC_004333.2 + 18558 0.67 0.521764
Target:  5'- -gGCGu--GCCGGcaACGGCGgGUACGc -3'
miRNA:   3'- caCGCcuuCGGCU--UGCCGCgCAUGCa -5'
17165 5' -57.3 NC_004333.2 + 22447 0.67 0.521764
Target:  5'- -gGCaGAcGGCCauccuCGGCGCGUGCGg -3'
miRNA:   3'- caCGcCU-UCGGcuu--GCCGCGCAUGCa -5'
17165 5' -57.3 NC_004333.2 + 30756 0.67 0.511298
Target:  5'- uUGCcGccGCCGGcgGCGGCGCGaACGg -3'
miRNA:   3'- cACGcCuuCGGCU--UGCCGCGCaUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.