miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17166 3' -53.5 NC_004333.2 + 38628 0.66 0.772957
Target:  5'- aGCaGCuGUGUCGUuGCCGugAgcGCGu -3'
miRNA:   3'- aCG-CGcUACAGCAuCGGCugUauCGU- -5'
17166 3' -53.5 NC_004333.2 + 9998 0.66 0.769842
Target:  5'- uUGCGCGGguUGUCGgccgucuGCgCGACGUgcuugaucaugaggGGCAg -3'
miRNA:   3'- -ACGCGCU--ACAGCau-----CG-GCUGUA--------------UCGU- -5'
17166 3' -53.5 NC_004333.2 + 39596 0.66 0.76147
Target:  5'- gGCGCcgcaaccGAUGUCGauaUAGCCGAUc-GGCGu -3'
miRNA:   3'- aCGCG-------CUACAGC---AUCGGCUGuaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 8964 0.66 0.751944
Target:  5'- gUGCGCGGgcugGaUCGUgGGCCGuGCGcGGCGg -3'
miRNA:   3'- -ACGCGCUa---C-AGCA-UCGGC-UGUaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 37447 0.66 0.741237
Target:  5'- gGCGUGAcgaaCGgcGCCGACAUuccGGCGc -3'
miRNA:   3'- aCGCGCUaca-GCauCGGCUGUA---UCGU- -5'
17166 3' -53.5 NC_004333.2 + 18193 0.66 0.741237
Target:  5'- aUGCGCuc-GUCGUGcGCgCGGCAUcGCAa -3'
miRNA:   3'- -ACGCGcuaCAGCAU-CG-GCUGUAuCGU- -5'
17166 3' -53.5 NC_004333.2 + 32208 0.66 0.741237
Target:  5'- aGCGCGAUGagcaCGUcGCCGAgCGUcuugAGCu -3'
miRNA:   3'- aCGCGCUACa---GCAuCGGCU-GUA----UCGu -5'
17166 3' -53.5 NC_004333.2 + 45977 0.66 0.738002
Target:  5'- gGCGUGGUGucccggccugccacUCGgcGCCGAgGgcUGGCAc -3'
miRNA:   3'- aCGCGCUAC--------------AGCauCGGCUgU--AUCGU- -5'
17166 3' -53.5 NC_004333.2 + 32284 0.66 0.730414
Target:  5'- gGCGCGG-GUCGgcggcgauGUCGACGUgcgucAGCAg -3'
miRNA:   3'- aCGCGCUaCAGCau------CGGCUGUA-----UCGU- -5'
17166 3' -53.5 NC_004333.2 + 13698 0.67 0.719487
Target:  5'- cGCGCGAUGcacgaaGUGcucGCCGACGaguGCAu -3'
miRNA:   3'- aCGCGCUACag----CAU---CGGCUGUau-CGU- -5'
17166 3' -53.5 NC_004333.2 + 43511 0.67 0.708468
Target:  5'- cGCGCGAUGcgcgCGUccgucAGCcCGACccgAGCGu -3'
miRNA:   3'- aCGCGCUACa---GCA-----UCG-GCUGua-UCGU- -5'
17166 3' -53.5 NC_004333.2 + 39073 0.67 0.708468
Target:  5'- cGCGCGAc-UCGUGcGCCGuGCGUcGGCAc -3'
miRNA:   3'- aCGCGCUacAGCAU-CGGC-UGUA-UCGU- -5'
17166 3' -53.5 NC_004333.2 + 24335 0.67 0.708468
Target:  5'- aUGCGCccccaGAUGUCGaGGCCGAacccuuGCGc -3'
miRNA:   3'- -ACGCG-----CUACAGCaUCGGCUguau--CGU- -5'
17166 3' -53.5 NC_004333.2 + 45007 0.67 0.708468
Target:  5'- gGCGCGcUGUCc-GGCCGcucgaccgcGCGUGGCGc -3'
miRNA:   3'- aCGCGCuACAGcaUCGGC---------UGUAUCGU- -5'
17166 3' -53.5 NC_004333.2 + 21026 0.67 0.701818
Target:  5'- cGCGCGuuugcguccggccccGUGgCGUAGCCG-CcgGGCGu -3'
miRNA:   3'- aCGCGC---------------UACaGCAUCGGCuGuaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 19503 0.67 0.696257
Target:  5'- gGCGCGcUGgcggcgcUCGUGGCCGuaugGGCAa -3'
miRNA:   3'- aCGCGCuAC-------AGCAUCGGCuguaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 4989 0.67 0.686206
Target:  5'- gGCGCGAUGUUuUGGauggCGACGgcGCAc -3'
miRNA:   3'- aCGCGCUACAGcAUCg---GCUGUauCGU- -5'
17166 3' -53.5 NC_004333.2 + 29118 0.67 0.674986
Target:  5'- gGCGCGA--UCGUGGgCGGCGcGGUg -3'
miRNA:   3'- aCGCGCUacAGCAUCgGCUGUaUCGu -5'
17166 3' -53.5 NC_004333.2 + 23359 0.67 0.674986
Target:  5'- gUGCGCuuacacugGUCGU-GCCGACcUGGCu -3'
miRNA:   3'- -ACGCGcua-----CAGCAuCGGCUGuAUCGu -5'
17166 3' -53.5 NC_004333.2 + 31356 0.67 0.674986
Target:  5'- gGUGCGGccgGUCuc-GCCGGCAUGGUg -3'
miRNA:   3'- aCGCGCUa--CAGcauCGGCUGUAUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.