Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17166 | 3' | -53.5 | NC_004333.2 | + | 38628 | 0.66 | 0.772957 |
Target: 5'- aGCaGCuGUGUCGUuGCCGugAgcGCGu -3' miRNA: 3'- aCG-CGcUACAGCAuCGGCugUauCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 32208 | 0.66 | 0.741237 |
Target: 5'- aGCGCGAUGagcaCGUcGCCGAgCGUcuugAGCu -3' miRNA: 3'- aCGCGCUACa---GCAuCGGCU-GUA----UCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 32284 | 0.66 | 0.730414 |
Target: 5'- gGCGCGG-GUCGgcggcgauGUCGACGUgcgucAGCAg -3' miRNA: 3'- aCGCGCUaCAGCau------CGGCUGUA-----UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 37447 | 0.66 | 0.741237 |
Target: 5'- gGCGUGAcgaaCGgcGCCGACAUuccGGCGc -3' miRNA: 3'- aCGCGCUaca-GCauCGGCUGUA---UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 45977 | 0.66 | 0.738002 |
Target: 5'- gGCGUGGUGucccggccugccacUCGgcGCCGAgGgcUGGCAc -3' miRNA: 3'- aCGCGCUAC--------------AGCauCGGCUgU--AUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 18193 | 0.66 | 0.741237 |
Target: 5'- aUGCGCuc-GUCGUGcGCgCGGCAUcGCAa -3' miRNA: 3'- -ACGCGcuaCAGCAU-CG-GCUGUAuCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 9998 | 0.66 | 0.769842 |
Target: 5'- uUGCGCGGguUGUCGgccgucuGCgCGACGUgcuugaucaugaggGGCAg -3' miRNA: 3'- -ACGCGCU--ACAGCau-----CG-GCUGUA--------------UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 8964 | 0.66 | 0.751944 |
Target: 5'- gUGCGCGGgcugGaUCGUgGGCCGuGCGcGGCGg -3' miRNA: 3'- -ACGCGCUa---C-AGCA-UCGGC-UGUaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 39596 | 0.66 | 0.76147 |
Target: 5'- gGCGCcgcaaccGAUGUCGauaUAGCCGAUc-GGCGu -3' miRNA: 3'- aCGCG-------CUACAGC---AUCGGCUGuaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 31356 | 0.67 | 0.674986 |
Target: 5'- gGUGCGGccgGUCuc-GCCGGCAUGGUg -3' miRNA: 3'- aCGCGCUa--CAGcauCGGCUGUAUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 13698 | 0.67 | 0.719487 |
Target: 5'- cGCGCGAUGcacgaaGUGcucGCCGACGaguGCAu -3' miRNA: 3'- aCGCGCUACag----CAU---CGGCUGUau-CGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 24335 | 0.67 | 0.708468 |
Target: 5'- aUGCGCccccaGAUGUCGaGGCCGAacccuuGCGc -3' miRNA: 3'- -ACGCG-----CUACAGCaUCGGCUguau--CGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 45007 | 0.67 | 0.708468 |
Target: 5'- gGCGCGcUGUCc-GGCCGcucgaccgcGCGUGGCGc -3' miRNA: 3'- aCGCGCuACAGcaUCGGC---------UGUAUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 43511 | 0.67 | 0.708468 |
Target: 5'- cGCGCGAUGcgcgCGUccgucAGCcCGACccgAGCGu -3' miRNA: 3'- aCGCGCUACa---GCA-----UCG-GCUGua-UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 21026 | 0.67 | 0.701818 |
Target: 5'- cGCGCGuuugcguccggccccGUGgCGUAGCCG-CcgGGCGu -3' miRNA: 3'- aCGCGC---------------UACaGCAUCGGCuGuaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 39073 | 0.67 | 0.708468 |
Target: 5'- cGCGCGAc-UCGUGcGCCGuGCGUcGGCAc -3' miRNA: 3'- aCGCGCUacAGCAU-CGGC-UGUA-UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 29118 | 0.67 | 0.674986 |
Target: 5'- gGCGCGA--UCGUGGgCGGCGcGGUg -3' miRNA: 3'- aCGCGCUacAGCAUCgGCUGUaUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 4989 | 0.67 | 0.686206 |
Target: 5'- gGCGCGAUGUUuUGGauggCGACGgcGCAc -3' miRNA: 3'- aCGCGCUACAGcAUCg---GCUGUauCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 23359 | 0.67 | 0.674986 |
Target: 5'- gUGCGCuuacacugGUCGU-GCCGACcUGGCu -3' miRNA: 3'- -ACGCGcua-----CAGCAuCGGCUGuAUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 42201 | 0.67 | 0.674986 |
Target: 5'- aGCGUcAUGUCGUGcaCCGGCAacUGGCGc -3' miRNA: 3'- aCGCGcUACAGCAUc-GGCUGU--AUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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