Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17166 | 3' | -53.5 | NC_004333.2 | + | 4346 | 0.69 | 0.595882 |
Target: 5'- gGCaCGAUGUUGU-GUCGACcgGGCGc -3' miRNA: 3'- aCGcGCUACAGCAuCGGCUGuaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 4989 | 0.67 | 0.686206 |
Target: 5'- gGCGCGAUGUUuUGGauggCGACGgcGCAc -3' miRNA: 3'- aCGCGCUACAGcAUCg---GCUGUauCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 8632 | 0.73 | 0.35134 |
Target: 5'- aUGCGCGAcGUCG-AGCuCGGCGcGGCGc -3' miRNA: 3'- -ACGCGCUaCAGCaUCG-GCUGUaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 8964 | 0.66 | 0.751944 |
Target: 5'- gUGCGCGGgcugGaUCGUgGGCCGuGCGcGGCGg -3' miRNA: 3'- -ACGCGCUa---C-AGCA-UCGGC-UGUaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 9998 | 0.66 | 0.769842 |
Target: 5'- uUGCGCGGguUGUCGgccgucuGCgCGACGUgcuugaucaugaggGGCAg -3' miRNA: 3'- -ACGCGCU--ACAGCau-----CG-GCUGUA--------------UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 11732 | 0.77 | 0.214306 |
Target: 5'- cUGCGCGAUGUCcggcAGCCGACc-GGCAc -3' miRNA: 3'- -ACGCGCUACAGca--UCGGCUGuaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 11889 | 0.74 | 0.334359 |
Target: 5'- gGCGCGAgcaccuUGUCGUcgcGGCCcGGCAUGcGCAg -3' miRNA: 3'- aCGCGCU------ACAGCA---UCGG-CUGUAU-CGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 13698 | 0.67 | 0.719487 |
Target: 5'- cGCGCGAUGcacgaaGUGcucGCCGACGaguGCAu -3' miRNA: 3'- aCGCGCUACag----CAU---CGGCUGUau-CGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 13884 | 0.72 | 0.39641 |
Target: 5'- cGCGCGAaGUCG--GCCGGCAcgGGCu -3' miRNA: 3'- aCGCGCUaCAGCauCGGCUGUa-UCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 13907 | 0.68 | 0.662595 |
Target: 5'- cUGCGCGgcGgcugccguggcgaUCGUGGCCGcugccgccaGCGUGGCc -3' miRNA: 3'- -ACGCGCuaC-------------AGCAUCGGC---------UGUAUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 15531 | 0.74 | 0.317987 |
Target: 5'- aGCGCGAUGU--UAGCgGGCAUcgAGCAg -3' miRNA: 3'- aCGCGCUACAgcAUCGgCUGUA--UCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 17151 | 0.72 | 0.405861 |
Target: 5'- aUGCGCGAggaaGUCGUGcgcGUCGACAaGGCc -3' miRNA: 3'- -ACGCGCUa---CAGCAU---CGGCUGUaUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 17630 | 0.73 | 0.377941 |
Target: 5'- cGCGCccGGUGcCGUGGCCGACAcguucGCGa -3' miRNA: 3'- aCGCG--CUACaGCAUCGGCUGUau---CGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 18193 | 0.66 | 0.741237 |
Target: 5'- aUGCGCuc-GUCGUGcGCgCGGCAUcGCAa -3' miRNA: 3'- -ACGCGcuaCAGCAU-CG-GCUGUAuCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 19503 | 0.67 | 0.696257 |
Target: 5'- gGCGCGcUGgcggcgcUCGUGGCCGuaugGGCAa -3' miRNA: 3'- aCGCGCuAC-------AGCAUCGGCuguaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 19626 | 0.68 | 0.65243 |
Target: 5'- aGCGCGgcGagCGcGGCCGACGcUGGCc -3' miRNA: 3'- aCGCGCuaCa-GCaUCGGCUGU-AUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 20408 | 0.68 | 0.641116 |
Target: 5'- gGuCGCGGUacccGUCGgcacGGCCGGCAagccUGGCAa -3' miRNA: 3'- aC-GCGCUA----CAGCa---UCGGCUGU----AUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 21026 | 0.67 | 0.701818 |
Target: 5'- cGCGCGuuugcguccggccccGUGgCGUAGCCG-CcgGGCGu -3' miRNA: 3'- aCGCGC---------------UACaGCAUCGGCuGuaUCGU- -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 23359 | 0.67 | 0.674986 |
Target: 5'- gUGCGCuuacacugGUCGU-GCCGACcUGGCu -3' miRNA: 3'- -ACGCGcua-----CAGCAuCGGCUGuAUCGu -5' |
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17166 | 3' | -53.5 | NC_004333.2 | + | 24049 | 1.09 | 0.00121 |
Target: 5'- aUGCGCGAUGUCGUAGCCGACAUAGCAc -3' miRNA: 3'- -ACGCGCUACAGCAUCGGCUGUAUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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