miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17166 3' -53.5 NC_004333.2 + 11889 0.74 0.334359
Target:  5'- gGCGCGAgcaccuUGUCGUcgcGGCCcGGCAUGcGCAg -3'
miRNA:   3'- aCGCGCU------ACAGCA---UCGG-CUGUAU-CGU- -5'
17166 3' -53.5 NC_004333.2 + 32284 0.66 0.730414
Target:  5'- gGCGCGG-GUCGgcggcgauGUCGACGUgcgucAGCAg -3'
miRNA:   3'- aCGCGCUaCAGCau------CGGCUGUA-----UCGU- -5'
17166 3' -53.5 NC_004333.2 + 32208 0.66 0.741237
Target:  5'- aGCGCGAUGagcaCGUcGCCGAgCGUcuugAGCu -3'
miRNA:   3'- aCGCGCUACa---GCAuCGGCU-GUA----UCGu -5'
17166 3' -53.5 NC_004333.2 + 9998 0.66 0.769842
Target:  5'- uUGCGCGGguUGUCGgccgucuGCgCGACGUgcuugaucaugaggGGCAg -3'
miRNA:   3'- -ACGCGCU--ACAGCau-----CG-GCUGUA--------------UCGU- -5'
17166 3' -53.5 NC_004333.2 + 17151 0.72 0.405861
Target:  5'- aUGCGCGAggaaGUCGUGcgcGUCGACAaGGCc -3'
miRNA:   3'- -ACGCGCUa---CAGCAU---CGGCUGUaUCGu -5'
17166 3' -53.5 NC_004333.2 + 44962 0.7 0.496828
Target:  5'- cGCGCGcacGUCGgcGGCCGACugcAGCAc -3'
miRNA:   3'- aCGCGCua-CAGCa-UCGGCUGua-UCGU- -5'
17166 3' -53.5 NC_004333.2 + 24049 1.09 0.00121
Target:  5'- aUGCGCGAUGUCGUAGCCGACAUAGCAc -3'
miRNA:   3'- -ACGCGCUACAGCAUCGGCUGUAUCGU- -5'
17166 3' -53.5 NC_004333.2 + 48063 0.85 0.058584
Target:  5'- aUGCGCGAUGUCGUGcugcucgguGCCGACGaGGCGc -3'
miRNA:   3'- -ACGCGCUACAGCAU---------CGGCUGUaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 11732 0.77 0.214306
Target:  5'- cUGCGCGAUGUCcggcAGCCGACc-GGCAc -3'
miRNA:   3'- -ACGCGCUACAGca--UCGGCUGuaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 39073 0.67 0.708468
Target:  5'- cGCGCGAc-UCGUGcGCCGuGCGUcGGCAc -3'
miRNA:   3'- aCGCGCUacAGCAU-CGGC-UGUA-UCGU- -5'
17166 3' -53.5 NC_004333.2 + 19503 0.67 0.696257
Target:  5'- gGCGCGcUGgcggcgcUCGUGGCCGuaugGGCAa -3'
miRNA:   3'- aCGCGCuAC-------AGCAUCGGCuguaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 13907 0.68 0.662595
Target:  5'- cUGCGCGgcGgcugccguggcgaUCGUGGCCGcugccgccaGCGUGGCc -3'
miRNA:   3'- -ACGCGCuaC-------------AGCAUCGGC---------UGUAUCGu -5'
17166 3' -53.5 NC_004333.2 + 8632 0.73 0.35134
Target:  5'- aUGCGCGAcGUCG-AGCuCGGCGcGGCGc -3'
miRNA:   3'- -ACGCGCUaCAGCaUCG-GCUGUaUCGU- -5'
17166 3' -53.5 NC_004333.2 + 45007 0.67 0.708468
Target:  5'- gGCGCGcUGUCc-GGCCGcucgaccgcGCGUGGCGc -3'
miRNA:   3'- aCGCGCuACAGcaUCGGC---------UGUAUCGU- -5'
17166 3' -53.5 NC_004333.2 + 17630 0.73 0.377941
Target:  5'- cGCGCccGGUGcCGUGGCCGACAcguucGCGa -3'
miRNA:   3'- aCGCG--CUACaGCAUCGGCUGUau---CGU- -5'
17166 3' -53.5 NC_004333.2 + 19626 0.68 0.65243
Target:  5'- aGCGCGgcGagCGcGGCCGACGcUGGCc -3'
miRNA:   3'- aCGCGCuaCa-GCaUCGGCUGU-AUCGu -5'
17166 3' -53.5 NC_004333.2 + 24335 0.67 0.708468
Target:  5'- aUGCGCccccaGAUGUCGaGGCCGAacccuuGCGc -3'
miRNA:   3'- -ACGCG-----CUACAGCaUCGGCUguau--CGU- -5'
17166 3' -53.5 NC_004333.2 + 45977 0.66 0.738002
Target:  5'- gGCGUGGUGucccggccugccacUCGgcGCCGAgGgcUGGCAc -3'
miRNA:   3'- aCGCGCUAC--------------AGCauCGGCUgU--AUCGU- -5'
17166 3' -53.5 NC_004333.2 + 13884 0.72 0.39641
Target:  5'- cGCGCGAaGUCG--GCCGGCAcgGGCu -3'
miRNA:   3'- aCGCGCUaCAGCauCGGCUGUa-UCGu -5'
17166 3' -53.5 NC_004333.2 + 29148 0.69 0.58463
Target:  5'- -uCGCaucggCGUAGCCGACGUAGUAg -3'
miRNA:   3'- acGCGcuacaGCAUCGGCUGUAUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.