Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17167 | 3' | -51.5 | NC_004333.2 | + | 23487 | 0.66 | 0.854875 |
Target: 5'- cGGCGGCGGguacgugCCGGgcuaccAGUACGgCGUg -3' miRNA: 3'- -UCGUCGUCaaa----GGCCa-----UCAUGC-GUAg -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 45536 | 0.67 | 0.787564 |
Target: 5'- gGGCGGCAGguggacgCC-GUAGUugGCcgCc -3' miRNA: 3'- -UCGUCGUCaaa----GGcCAUCAugCGuaG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 3929 | 0.67 | 0.777138 |
Target: 5'- cGGCGGCAGgccgaCCGGcaGGUugGCGc- -3' miRNA: 3'- -UCGUCGUCaaa--GGCCa-UCAugCGUag -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 9538 | 0.68 | 0.755802 |
Target: 5'- cGGCGGCGGUgcggcacCCGcGccUGGUGCGCAg- -3' miRNA: 3'- -UCGUCGUCAaa-----GGC-C--AUCAUGCGUag -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 32258 | 0.68 | 0.722787 |
Target: 5'- cAGCAGCGGccgaaagccUUCCGGaUGGcGCGgGUCg -3' miRNA: 3'- -UCGUCGUCa--------AAGGCC-AUCaUGCgUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 28975 | 0.68 | 0.722787 |
Target: 5'- cGCGGCgaucAGUUgcgcggccgCCGGgucggcGUGCGCAUCg -3' miRNA: 3'- uCGUCG----UCAAa--------GGCCau----CAUGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 36311 | 0.68 | 0.711566 |
Target: 5'- cGCccgAGUAGUcgCCGGgcGU-CGCAUCg -3' miRNA: 3'- uCG---UCGUCAaaGGCCauCAuGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 47540 | 0.69 | 0.688878 |
Target: 5'- cGCGGCAGUcgccgCCGGcgcguugcUAGUcgAUGCGUCg -3' miRNA: 3'- uCGUCGUCAaa---GGCC--------AUCA--UGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 33459 | 0.7 | 0.647502 |
Target: 5'- uGGCAGCGGcgcgCCGGgcgauccagaguugAGUGgGCGUCu -3' miRNA: 3'- -UCGUCGUCaaa-GGCCa-------------UCAUgCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 32940 | 0.7 | 0.61977 |
Target: 5'- uGGCAGCAGgua--GGc-GUGCGCGUCg -3' miRNA: 3'- -UCGUCGUCaaaggCCauCAUGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 15506 | 0.73 | 0.442857 |
Target: 5'- cGCGGCGGUcaCCGGcg--GCGCGUCa -3' miRNA: 3'- uCGUCGUCAaaGGCCaucaUGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 47242 | 0.74 | 0.383958 |
Target: 5'- cGGCAGCGcGUucUUCCGGcgucAGaUGCGCAUCg -3' miRNA: 3'- -UCGUCGU-CA--AAGGCCa---UC-AUGCGUAG- -5' |
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17167 | 3' | -51.5 | NC_004333.2 | + | 24160 | 1.09 | 0.001642 |
Target: 5'- gAGCAGCAGUUUCCGGUAGUACGCAUCc -3' miRNA: 3'- -UCGUCGUCAAAGGCCAUCAUGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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