miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17167 5' -57.9 NC_004333.2 + 11816 0.66 0.590494
Target:  5'- uGAA--CGuCGGUGCCGGUCGgCUGc -3'
miRNA:   3'- gCUUacGCuGCCAUGGCCGGCgGACc -5'
17167 5' -57.9 NC_004333.2 + 25942 0.66 0.590494
Target:  5'- ----cGCGGCGcGaUGCCGGCgGCCa-- -3'
miRNA:   3'- gcuuaCGCUGC-C-AUGGCCGgCGGacc -5'
17167 5' -57.9 NC_004333.2 + 9619 0.66 0.569167
Target:  5'- cCGGuUGCGcacCGGcUGCCGGCggcgCGCCUGc -3'
miRNA:   3'- -GCUuACGCu--GCC-AUGGCCG----GCGGACc -5'
17167 5' -57.9 NC_004333.2 + 17456 0.66 0.569167
Target:  5'- cCGGAUGUGGCGcaACgcgaaGGCCGCCg-- -3'
miRNA:   3'- -GCUUACGCUGCcaUGg----CCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 39328 0.66 0.558574
Target:  5'- gCGcGUGCGcC--UGCCGGCCGCUcGGg -3'
miRNA:   3'- -GCuUACGCuGccAUGGCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 15506 0.66 0.558574
Target:  5'- ----cGCGGCGGUcACCGGCgGCg--- -3'
miRNA:   3'- gcuuaCGCUGCCA-UGGCCGgCGgacc -5'
17167 5' -57.9 NC_004333.2 + 15911 0.66 0.557518
Target:  5'- -cGAUGCGAccgcccaCGGUGCCaucGCCGCCa-- -3'
miRNA:   3'- gcUUACGCU-------GCCAUGGc--CGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 6676 0.66 0.548037
Target:  5'- gCGAcUGCGGCGcugGgCGGCgCGCCgUGGc -3'
miRNA:   3'- -GCUuACGCUGCca-UgGCCG-GCGG-ACC- -5'
17167 5' -57.9 NC_004333.2 + 41821 0.67 0.496427
Target:  5'- cCGAcgGCacGACGGcgcCCGGCCGCgaGcGg -3'
miRNA:   3'- -GCUuaCG--CUGCCau-GGCCGGCGgaC-C- -5'
17167 5' -57.9 NC_004333.2 + 19163 0.67 0.496427
Target:  5'- aGAAUcGUGACGGUcacACgGGCCGCgCcgagUGGc -3'
miRNA:   3'- gCUUA-CGCUGCCA---UGgCCGGCG-G----ACC- -5'
17167 5' -57.9 NC_004333.2 + 20575 0.67 0.495416
Target:  5'- gCGGcgGCGgccggcaGCGGUugCGcggcaGCCGCCgGGa -3'
miRNA:   3'- -GCUuaCGC-------UGCCAugGC-----CGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 28467 0.68 0.455802
Target:  5'- gCGAuUGCGGCGGUuauugguucccgcACCgccguGGCUGCCUa- -3'
miRNA:   3'- -GCUuACGCUGCCA-------------UGG-----CCGGCGGAcc -5'
17167 5' -57.9 NC_004333.2 + 20428 0.68 0.450006
Target:  5'- uCGAcgGCGuucacgaagccggucGCGGUacccgucggcacgGCCGGCaaGCCUGGc -3'
miRNA:   3'- -GCUuaCGC---------------UGCCA-------------UGGCCGg-CGGACC- -5'
17167 5' -57.9 NC_004333.2 + 12471 0.68 0.447124
Target:  5'- cCGAagGCGGCGacACUGGCgCGCCgGGc -3'
miRNA:   3'- -GCUuaCGCUGCcaUGGCCG-GCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 34034 0.68 0.437591
Target:  5'- gCGggUcacucGCGACGGgcaucACgGuGCCGUCUGGc -3'
miRNA:   3'- -GCuuA-----CGCUGCCa----UGgC-CGGCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 30499 0.68 0.437591
Target:  5'- cCGAgcGUGCGGCcgaccaGGcUGCCGGCCaGCUUGu -3'
miRNA:   3'- -GCU--UACGCUG------CC-AUGGCCGG-CGGACc -5'
17167 5' -57.9 NC_004333.2 + 26444 0.69 0.409709
Target:  5'- --uGUGCGGCGuGccgACCuGGCCGCCUuguGGa -3'
miRNA:   3'- gcuUACGCUGC-Ca--UGG-CCGGCGGA---CC- -5'
17167 5' -57.9 NC_004333.2 + 13828 0.69 0.400664
Target:  5'- gCGAcgGCGACGGUucgacgaCGGgCGCCg-- -3'
miRNA:   3'- -GCUuaCGCUGCCAug-----GCCgGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 26023 0.69 0.400664
Target:  5'- ----aGCGcCGcGUACUGGCCGCC-GGc -3'
miRNA:   3'- gcuuaCGCuGC-CAUGGCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 44396 0.69 0.374306
Target:  5'- gCGcGUGCG-CGGUACaaCGGCCuGCCgGGc -3'
miRNA:   3'- -GCuUACGCuGCCAUG--GCCGG-CGGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.