Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 2394 | 0.7 | 0.365785 |
Target: 5'- uGAcgGCGcCGG---CGGUCGCCUGGu -3' miRNA: 3'- gCUuaCGCuGCCaugGCCGGCGGACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 4648 | 0.71 | 0.317518 |
Target: 5'- gCGAucaugGCGACGGgcagGCCGGCgCGCg-GGu -3' miRNA: 3'- -GCUua---CGCUGCCa---UGGCCG-GCGgaCC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 5118 | 0.7 | 0.325219 |
Target: 5'- cCGA---CGuCGGccaacaGCCGGCCGCCUGGc -3' miRNA: 3'- -GCUuacGCuGCCa-----UGGCCGGCGGACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 5282 | 0.78 | 0.111713 |
Target: 5'- cCGAGuuUGCGACGGUGCCGacGCCgcGCCUGc -3' miRNA: 3'- -GCUU--ACGCUGCCAUGGC--CGG--CGGACc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 6676 | 0.66 | 0.548037 |
Target: 5'- gCGAcUGCGGCGcugGgCGGCgCGCCgUGGc -3' miRNA: 3'- -GCUuACGCUGCca-UgGCCG-GCGG-ACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 8240 | 0.7 | 0.357399 |
Target: 5'- uGAGUacGCGAUGG-ACgCGGCCGaCCUGu -3' miRNA: 3'- gCUUA--CGCUGCCaUG-GCCGGC-GGACc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 9548 | 0.71 | 0.295243 |
Target: 5'- uCGAGcagcucgGCGGCGGUG-CGGCacccgCGCCUGGu -3' miRNA: 3'- -GCUUa------CGCUGCCAUgGCCG-----GCGGACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 9619 | 0.66 | 0.569167 |
Target: 5'- cCGGuUGCGcacCGGcUGCCGGCggcgCGCCUGc -3' miRNA: 3'- -GCUuACGCu--GCC-AUGGCCG----GCGGACc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 11816 | 0.66 | 0.590494 |
Target: 5'- uGAA--CGuCGGUGCCGGUCGgCUGc -3' miRNA: 3'- gCUUacGCuGCCAUGGCCGGCgGACc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 12471 | 0.68 | 0.447124 |
Target: 5'- cCGAagGCGGCGacACUGGCgCGCCgGGc -3' miRNA: 3'- -GCUuaCGCUGCcaUGGCCG-GCGGaCC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 13828 | 0.69 | 0.400664 |
Target: 5'- gCGAcgGCGACGGUucgacgaCGGgCGCCg-- -3' miRNA: 3'- -GCUuaCGCUGCCAug-----GCCgGCGGacc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 15506 | 0.66 | 0.558574 |
Target: 5'- ----cGCGGCGGUcACCGGCgGCg--- -3' miRNA: 3'- gcuuaCGCUGCCA-UGGCCGgCGgacc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 15831 | 0.71 | 0.309955 |
Target: 5'- uGAAgucGCGACGGU-UCGGUCGCUacgUGGa -3' miRNA: 3'- gCUUa--CGCUGCCAuGGCCGGCGG---ACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 15911 | 0.66 | 0.557518 |
Target: 5'- -cGAUGCGAccgcccaCGGUGCCaucGCCGCCa-- -3' miRNA: 3'- gcUUACGCU-------GCCAUGGc--CGGCGGacc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 17456 | 0.66 | 0.569167 |
Target: 5'- cCGGAUGUGGCGcaACgcgaaGGCCGCCg-- -3' miRNA: 3'- -GCUUACGCUGCcaUGg----CCGGCGGacc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 19163 | 0.67 | 0.496427 |
Target: 5'- aGAAUcGUGACGGUcacACgGGCCGCgCcgagUGGc -3' miRNA: 3'- gCUUA-CGCUGCCA---UGgCCGGCG-G----ACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 20428 | 0.68 | 0.450006 |
Target: 5'- uCGAcgGCGuucacgaagccggucGCGGUacccgucggcacgGCCGGCaaGCCUGGc -3' miRNA: 3'- -GCUuaCGC---------------UGCCA-------------UGGCCGg-CGGACC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 20575 | 0.67 | 0.495416 |
Target: 5'- gCGGcgGCGgccggcaGCGGUugCGcggcaGCCGCCgGGa -3' miRNA: 3'- -GCUuaCGC-------UGCCAugGC-----CGGCGGaCC- -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 22974 | 0.74 | 0.196718 |
Target: 5'- cCGGcaGCGucGCGGUACCGGUCGCCg-- -3' miRNA: 3'- -GCUuaCGC--UGCCAUGGCCGGCGGacc -5' |
|||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 24194 | 1.09 | 0.000542 |
Target: 5'- gCGAAUGCGACGGUACCGGCCGCCUGGc -3' miRNA: 3'- -GCUUACGCUGCCAUGGCCGGCGGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home