miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17167 5' -57.9 NC_004333.2 + 25942 0.66 0.590494
Target:  5'- ----cGCGGCGcGaUGCCGGCgGCCa-- -3'
miRNA:   3'- gcuuaCGCUGC-C-AUGGCCGgCGGacc -5'
17167 5' -57.9 NC_004333.2 + 26023 0.69 0.400664
Target:  5'- ----aGCGcCGcGUACUGGCCGCC-GGc -3'
miRNA:   3'- gcuuaCGCuGC-CAUGGCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 26444 0.69 0.409709
Target:  5'- --uGUGCGGCGuGccgACCuGGCCGCCUuguGGa -3'
miRNA:   3'- gcuUACGCUGC-Ca--UGG-CCGGCGGA---CC- -5'
17167 5' -57.9 NC_004333.2 + 28467 0.68 0.455802
Target:  5'- gCGAuUGCGGCGGUuauugguucccgcACCgccguGGCUGCCUa- -3'
miRNA:   3'- -GCUuACGCUGCCA-------------UGG-----CCGGCGGAcc -5'
17167 5' -57.9 NC_004333.2 + 28970 0.7 0.333058
Target:  5'- uCGAAcGCGGCGaucaguUGCgCGGCCGCCgGGu -3'
miRNA:   3'- -GCUUaCGCUGCc-----AUG-GCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 30283 0.7 0.365785
Target:  5'- uCGAGUuuCGACGGcgaGCUGGCCGCCg-- -3'
miRNA:   3'- -GCUUAc-GCUGCCa--UGGCCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 30499 0.68 0.437591
Target:  5'- cCGAgcGUGCGGCcgaccaGGcUGCCGGCCaGCUUGu -3'
miRNA:   3'- -GCU--UACGCUG------CC-AUGGCCGG-CGGACc -5'
17167 5' -57.9 NC_004333.2 + 30597 0.72 0.28108
Target:  5'- uCGAGUgGgGAUGGgacaagcugGCCGGCaGCCUGGu -3'
miRNA:   3'- -GCUUA-CgCUGCCa--------UGGCCGgCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 34034 0.68 0.437591
Target:  5'- gCGggUcacucGCGACGGgcaucACgGuGCCGUCUGGc -3'
miRNA:   3'- -GCuuA-----CGCUGCCa----UGgC-CGGCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 36827 0.73 0.241832
Target:  5'- uCGAGUGCGcgcuACGGccaucGCCGGCCGCUa-- -3'
miRNA:   3'- -GCUUACGC----UGCCa----UGGCCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 39328 0.66 0.558574
Target:  5'- gCGcGUGCGcC--UGCCGGCCGCUcGGg -3'
miRNA:   3'- -GCuUACGCuGccAUGGCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 41821 0.67 0.496427
Target:  5'- cCGAcgGCacGACGGcgcCCGGCCGCgaGcGg -3'
miRNA:   3'- -GCUuaCG--CUGCCau-GGCCGGCGgaC-C- -5'
17167 5' -57.9 NC_004333.2 + 44396 0.69 0.374306
Target:  5'- gCGcGUGCG-CGGUACaaCGGCCuGCCgGGc -3'
miRNA:   3'- -GCuUACGCuGCCAUG--GCCGG-CGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 46876 0.7 0.349148
Target:  5'- uCGuguUGCGcACGGUAUagaCGGCaCGCUUGGa -3'
miRNA:   3'- -GCuu-ACGC-UGCCAUG---GCCG-GCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.