miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17167 5' -57.9 NC_004333.2 + 28970 0.7 0.333058
Target:  5'- uCGAAcGCGGCGaucaguUGCgCGGCCGCCgGGu -3'
miRNA:   3'- -GCUUaCGCUGCc-----AUG-GCCGGCGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 36827 0.73 0.241832
Target:  5'- uCGAGUGCGcgcuACGGccaucGCCGGCCGCUa-- -3'
miRNA:   3'- -GCUUACGC----UGCCa----UGGCCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 22974 0.74 0.196718
Target:  5'- cCGGcaGCGucGCGGUACCGGUCGCCg-- -3'
miRNA:   3'- -GCUuaCGC--UGCCAUGGCCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 24194 1.09 0.000542
Target:  5'- gCGAAUGCGACGGUACCGGCCGCCUGGc -3'
miRNA:   3'- -GCUUACGCUGCCAUGGCCGGCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 26444 0.69 0.409709
Target:  5'- --uGUGCGGCGuGccgACCuGGCCGCCUuguGGa -3'
miRNA:   3'- gcuUACGCUGC-Ca--UGG-CCGGCGGA---CC- -5'
17167 5' -57.9 NC_004333.2 + 13828 0.69 0.400664
Target:  5'- gCGAcgGCGACGGUucgacgaCGGgCGCCg-- -3'
miRNA:   3'- -GCUuaCGCUGCCAug-----GCCgGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 25942 0.66 0.590494
Target:  5'- ----cGCGGCGcGaUGCCGGCgGCCa-- -3'
miRNA:   3'- gcuuaCGCUGC-C-AUGGCCGgCGGacc -5'
17167 5' -57.9 NC_004333.2 + 15506 0.66 0.558574
Target:  5'- ----cGCGGCGGUcACCGGCgGCg--- -3'
miRNA:   3'- gcuuaCGCUGCCA-UGGCCGgCGgacc -5'
17167 5' -57.9 NC_004333.2 + 15911 0.66 0.557518
Target:  5'- -cGAUGCGAccgcccaCGGUGCCaucGCCGCCa-- -3'
miRNA:   3'- gcUUACGCU-------GCCAUGGc--CGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 30499 0.68 0.437591
Target:  5'- cCGAgcGUGCGGCcgaccaGGcUGCCGGCCaGCUUGu -3'
miRNA:   3'- -GCU--UACGCUG------CC-AUGGCCGG-CGGACc -5'
17167 5' -57.9 NC_004333.2 + 2394 0.7 0.365785
Target:  5'- uGAcgGCGcCGG---CGGUCGCCUGGu -3'
miRNA:   3'- gCUuaCGCuGCCaugGCCGGCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 9619 0.66 0.569167
Target:  5'- cCGGuUGCGcacCGGcUGCCGGCggcgCGCCUGc -3'
miRNA:   3'- -GCUuACGCu--GCC-AUGGCCG----GCGGACc -5'
17167 5' -57.9 NC_004333.2 + 30283 0.7 0.365785
Target:  5'- uCGAGUuuCGACGGcgaGCUGGCCGCCg-- -3'
miRNA:   3'- -GCUUAc-GCUGCCa--UGGCCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 41821 0.67 0.496427
Target:  5'- cCGAcgGCacGACGGcgcCCGGCCGCgaGcGg -3'
miRNA:   3'- -GCUuaCG--CUGCCau-GGCCGGCGgaC-C- -5'
17167 5' -57.9 NC_004333.2 + 17456 0.66 0.569167
Target:  5'- cCGGAUGUGGCGcaACgcgaaGGCCGCCg-- -3'
miRNA:   3'- -GCUUACGCUGCcaUGg----CCGGCGGacc -5'
17167 5' -57.9 NC_004333.2 + 44396 0.69 0.374306
Target:  5'- gCGcGUGCG-CGGUACaaCGGCCuGCCgGGc -3'
miRNA:   3'- -GCuUACGCuGCCAUG--GCCGG-CGGaCC- -5'
17167 5' -57.9 NC_004333.2 + 4648 0.71 0.317518
Target:  5'- gCGAucaugGCGACGGgcagGCCGGCgCGCg-GGu -3'
miRNA:   3'- -GCUua---CGCUGCCa---UGGCCG-GCGgaCC- -5'
17167 5' -57.9 NC_004333.2 + 9548 0.71 0.295243
Target:  5'- uCGAGcagcucgGCGGCGGUG-CGGCacccgCGCCUGGu -3'
miRNA:   3'- -GCUUa------CGCUGCCAUgGCCG-----GCGGACC- -5'
17167 5' -57.9 NC_004333.2 + 15831 0.71 0.309955
Target:  5'- uGAAgucGCGACGGU-UCGGUCGCUacgUGGa -3'
miRNA:   3'- gCUUa--CGCUGCCAuGGCCGGCGG---ACC- -5'
17167 5' -57.9 NC_004333.2 + 5118 0.7 0.325219
Target:  5'- cCGA---CGuCGGccaacaGCCGGCCGCCUGGc -3'
miRNA:   3'- -GCUuacGCuGCCa-----UGGCCGGCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.