Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17167 | 5' | -57.9 | NC_004333.2 | + | 11816 | 0.66 | 0.590494 |
Target: 5'- uGAA--CGuCGGUGCCGGUCGgCUGc -3' miRNA: 3'- gCUUacGCuGCCAUGGCCGGCgGACc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 5282 | 0.78 | 0.111713 |
Target: 5'- cCGAGuuUGCGACGGUGCCGacGCCgcGCCUGc -3' miRNA: 3'- -GCUU--ACGCUGCCAUGGC--CGG--CGGACc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 30597 | 0.72 | 0.28108 |
Target: 5'- uCGAGUgGgGAUGGgacaagcugGCCGGCaGCCUGGu -3' miRNA: 3'- -GCUUA-CgCUGCCa--------UGGCCGgCGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 9548 | 0.71 | 0.295243 |
Target: 5'- uCGAGcagcucgGCGGCGGUG-CGGCacccgCGCCUGGu -3' miRNA: 3'- -GCUUa------CGCUGCCAUgGCCG-----GCGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 15831 | 0.71 | 0.309955 |
Target: 5'- uGAAgucGCGACGGU-UCGGUCGCUacgUGGa -3' miRNA: 3'- gCUUa--CGCUGCCAuGGCCGGCGG---ACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 5118 | 0.7 | 0.325219 |
Target: 5'- cCGA---CGuCGGccaacaGCCGGCCGCCUGGc -3' miRNA: 3'- -GCUuacGCuGCCa-----UGGCCGGCGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 46876 | 0.7 | 0.349148 |
Target: 5'- uCGuguUGCGcACGGUAUagaCGGCaCGCUUGGa -3' miRNA: 3'- -GCuu-ACGC-UGCCAUG---GCCG-GCGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 8240 | 0.7 | 0.357399 |
Target: 5'- uGAGUacGCGAUGG-ACgCGGCCGaCCUGu -3' miRNA: 3'- gCUUA--CGCUGCCaUG-GCCGGC-GGACc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 26023 | 0.69 | 0.400664 |
Target: 5'- ----aGCGcCGcGUACUGGCCGCC-GGc -3' miRNA: 3'- gcuuaCGCuGC-CAUGGCCGGCGGaCC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 34034 | 0.68 | 0.437591 |
Target: 5'- gCGggUcacucGCGACGGgcaucACgGuGCCGUCUGGc -3' miRNA: 3'- -GCuuA-----CGCUGCCa----UGgC-CGGCGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 39328 | 0.66 | 0.558574 |
Target: 5'- gCGcGUGCGcC--UGCCGGCCGCUcGGg -3' miRNA: 3'- -GCuUACGCuGccAUGGCCGGCGGaCC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 6676 | 0.66 | 0.548037 |
Target: 5'- gCGAcUGCGGCGcugGgCGGCgCGCCgUGGc -3' miRNA: 3'- -GCUuACGCUGCca-UgGCCG-GCGG-ACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 19163 | 0.67 | 0.496427 |
Target: 5'- aGAAUcGUGACGGUcacACgGGCCGCgCcgagUGGc -3' miRNA: 3'- gCUUA-CGCUGCCA---UGgCCGGCG-G----ACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 20575 | 0.67 | 0.495416 |
Target: 5'- gCGGcgGCGgccggcaGCGGUugCGcggcaGCCGCCgGGa -3' miRNA: 3'- -GCUuaCGC-------UGCCAugGC-----CGGCGGaCC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 28467 | 0.68 | 0.455802 |
Target: 5'- gCGAuUGCGGCGGUuauugguucccgcACCgccguGGCUGCCUa- -3' miRNA: 3'- -GCUuACGCUGCCA-------------UGG-----CCGGCGGAcc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 20428 | 0.68 | 0.450006 |
Target: 5'- uCGAcgGCGuucacgaagccggucGCGGUacccgucggcacgGCCGGCaaGCCUGGc -3' miRNA: 3'- -GCUuaCGC---------------UGCCA-------------UGGCCGg-CGGACC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 12471 | 0.68 | 0.447124 |
Target: 5'- cCGAagGCGGCGacACUGGCgCGCCgGGc -3' miRNA: 3'- -GCUuaCGCUGCcaUGGCCG-GCGGaCC- -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 25942 | 0.66 | 0.590494 |
Target: 5'- ----cGCGGCGcGaUGCCGGCgGCCa-- -3' miRNA: 3'- gcuuaCGCUGC-C-AUGGCCGgCGGacc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 22974 | 0.74 | 0.196718 |
Target: 5'- cCGGcaGCGucGCGGUACCGGUCGCCg-- -3' miRNA: 3'- -GCUuaCGC--UGCCAUGGCCGGCGGacc -5' |
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17167 | 5' | -57.9 | NC_004333.2 | + | 36827 | 0.73 | 0.241832 |
Target: 5'- uCGAGUGCGcgcuACGGccaucGCCGGCCGCUa-- -3' miRNA: 3'- -GCUUACGC----UGCCa----UGGCCGGCGGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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