miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17168 3' -59.4 NC_004333.2 + 44634 0.65 0.451244
Target:  5'- ---cGCgucgGUGUCGAUCagugcguacuuguaCGUGCGCGCGAa -3'
miRNA:   3'- uugaCG----UACGGCUAG--------------GCGCGCGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 48192 0.66 0.434763
Target:  5'- cGACggucacCAUGCCGGcgCgGUGCGCGCGc -3'
miRNA:   3'- -UUGac----GUACGGCUa-GgCGCGCGCGCu -5'
17168 3' -59.4 NC_004333.2 + 35741 0.66 0.434763
Target:  5'- cGGCgGCGUGCCauagcagagcaGAUaCCGCGUGC-CGAa -3'
miRNA:   3'- -UUGaCGUACGG-----------CUA-GGCGCGCGcGCU- -5'
17168 3' -59.4 NC_004333.2 + 13970 0.66 0.425234
Target:  5'- aGGCgGCG-GCCGGUgcgcgcgagCUGCGCGCGCu- -3'
miRNA:   3'- -UUGaCGUaCGGCUA---------GGCGCGCGCGcu -5'
17168 3' -59.4 NC_004333.2 + 37682 0.66 0.425234
Target:  5'- cGCUcGUcgGCCGGcCCG-GCGCGUGGc -3'
miRNA:   3'- uUGA-CGuaCGGCUaGGCgCGCGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 38971 0.66 0.425234
Target:  5'- ---gGcCGUGCCGAUCaGCGCgaagcgGCGCGGg -3'
miRNA:   3'- uugaC-GUACGGCUAGgCGCG------CGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 3819 0.66 0.425234
Target:  5'- cGCUGUacggcaccuAUGCauuGAUCCGCccggggGUGCGCGAg -3'
miRNA:   3'- uUGACG---------UACGg--CUAGGCG------CGCGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 37719 0.66 0.415829
Target:  5'- -cCUGCucgAUGUCGGcaagcugCCGCGCcuGCGCGAg -3'
miRNA:   3'- uuGACG---UACGGCUa------GGCGCG--CGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 5051 0.66 0.415829
Target:  5'- cGGCUGUugGCCGAcgUCgGCGCgGCGCuGAa -3'
miRNA:   3'- -UUGACGuaCGGCU--AGgCGCG-CGCG-CU- -5'
17168 3' -59.4 NC_004333.2 + 2999 0.66 0.415829
Target:  5'- cGCUcGCcgGCgCG-UCCGCcgcgacguaGCGCGCGAa -3'
miRNA:   3'- uUGA-CGuaCG-GCuAGGCG---------CGCGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 47030 0.66 0.415829
Target:  5'- uAUUGCuUGUCG-UCgGCGCGCGCc- -3'
miRNA:   3'- uUGACGuACGGCuAGgCGCGCGCGcu -5'
17168 3' -59.4 NC_004333.2 + 29894 0.66 0.406554
Target:  5'- cGCUGCGcGaUCGggCCGCGCGCgGCa- -3'
miRNA:   3'- uUGACGUaC-GGCuaGGCGCGCG-CGcu -5'
17168 3' -59.4 NC_004333.2 + 31613 0.67 0.397409
Target:  5'- cGCcGUcucgGCCGcuguggCCGCGCGCGUGAa -3'
miRNA:   3'- uUGaCGua--CGGCua----GGCGCGCGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 33361 0.67 0.397409
Target:  5'- --aUGCG-GCCGAcgcaaCGCGCGCGCu- -3'
miRNA:   3'- uugACGUaCGGCUag---GCGCGCGCGcu -5'
17168 3' -59.4 NC_004333.2 + 37242 0.67 0.388397
Target:  5'- gAGCgGCGUGUCG--CCGCGCuGCGgGAu -3'
miRNA:   3'- -UUGaCGUACGGCuaGGCGCG-CGCgCU- -5'
17168 3' -59.4 NC_004333.2 + 6675 0.67 0.370781
Target:  5'- cGACUGCGgcGCUGggCgGCGCGcCGUGGc -3'
miRNA:   3'- -UUGACGUa-CGGCuaGgCGCGC-GCGCU- -5'
17168 3' -59.4 NC_004333.2 + 37830 0.67 0.365604
Target:  5'- -cCUGCGUgacgaaacgacgcucGUCGAUCuCGCGCagGCGCGGc -3'
miRNA:   3'- uuGACGUA---------------CGGCUAG-GCGCG--CGCGCU- -5'
17168 3' -59.4 NC_004333.2 + 29992 0.67 0.36218
Target:  5'- aAGCgcaugGCAaagcgGCCGAggaugCCGCGCGCGgccCGAu -3'
miRNA:   3'- -UUGa----CGUa----CGGCUa----GGCGCGCGC---GCU- -5'
17168 3' -59.4 NC_004333.2 + 1583 0.67 0.36218
Target:  5'- cGCUGCAgGCCGAcucgCCGuCGCucGCGCa- -3'
miRNA:   3'- uUGACGUaCGGCUa---GGC-GCG--CGCGcu -5'
17168 3' -59.4 NC_004333.2 + 17145 0.67 0.353719
Target:  5'- cAGC-GCAUGCgCGAggaagUCGUGCGCGuCGAc -3'
miRNA:   3'- -UUGaCGUACG-GCUa----GGCGCGCGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.