miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17168 5' -54.5 NC_004333.2 + 18777 0.66 0.762671
Target:  5'- cCUUCCCGcCAUCGcugaaccgcgcuuaUCGcGcGGCCGCa -3'
miRNA:   3'- -GAAGGGCaGUAGCc-------------AGCuCuUCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 108 0.66 0.758559
Target:  5'- --gCCCGUUGUCGuGUCGAGGu-UCGUg -3'
miRNA:   3'- gaaGGGCAGUAGC-CAGCUCUucGGCG- -5'
17168 5' -54.5 NC_004333.2 + 21016 0.66 0.748189
Target:  5'- ---gCCGUCA-CGGgCGAcGAaguGGCCGCg -3'
miRNA:   3'- gaagGGCAGUaGCCaGCU-CU---UCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 15145 0.66 0.7377
Target:  5'- --aCuuGgCGUCGGUUGAGuuGCgGCg -3'
miRNA:   3'- gaaGggCaGUAGCCAGCUCuuCGgCG- -5'
17168 5' -54.5 NC_004333.2 + 9058 0.66 0.7377
Target:  5'- ---gCCG-CGUCGGUCGcc--GCCGCg -3'
miRNA:   3'- gaagGGCaGUAGCCAGCucuuCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 13900 0.66 0.727104
Target:  5'- --gCCCGUCGUCGaaccGUCGccGucGCUGCg -3'
miRNA:   3'- gaaGGGCAGUAGC----CAGCu-CuuCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 42003 0.66 0.727104
Target:  5'- gCUUCCUGUCggUGcG-CGuGAAGCgCGCg -3'
miRNA:   3'- -GAAGGGCAGuaGC-CaGCuCUUCG-GCG- -5'
17168 5' -54.5 NC_004333.2 + 11126 0.66 0.716412
Target:  5'- --gCCCGg---CGGUCGAGAauucgacccgGGCgCGCu -3'
miRNA:   3'- gaaGGGCaguaGCCAGCUCU----------UCG-GCG- -5'
17168 5' -54.5 NC_004333.2 + 20896 0.66 0.716412
Target:  5'- --gCCCGUCG--GG-CaGGAAGCCGCu -3'
miRNA:   3'- gaaGGGCAGUagCCaGcUCUUCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 45143 0.67 0.705637
Target:  5'- --aCCUGUCGUCGcccgaaGUCGGcccGAuacuGGCCGCg -3'
miRNA:   3'- gaaGGGCAGUAGC------CAGCU---CU----UCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 28088 0.67 0.672921
Target:  5'- -aUCUgGuUCAUCGuGUCGAGcGGCaCGCc -3'
miRNA:   3'- gaAGGgC-AGUAGC-CAGCUCuUCG-GCG- -5'
17168 5' -54.5 NC_004333.2 + 7982 0.67 0.672921
Target:  5'- --cCUCGUCGUCGGcucugCGGugauGAAcGCCGCg -3'
miRNA:   3'- gaaGGGCAGUAGCCa----GCU----CUU-CGGCG- -5'
17168 5' -54.5 NC_004333.2 + 3294 0.67 0.672921
Target:  5'- --gCCCGgcgUCAUCGGggCGGGcGGCgCGCc -3'
miRNA:   3'- gaaGGGC---AGUAGCCa-GCUCuUCG-GCG- -5'
17168 5' -54.5 NC_004333.2 + 26377 0.68 0.639855
Target:  5'- -gUCgCUGcCGUCGGUCGuGAuagcgcuuGGCUGCa -3'
miRNA:   3'- gaAG-GGCaGUAGCCAGCuCU--------UCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 2740 0.68 0.628805
Target:  5'- --gCCCGUCA-CaGcCGAGAucgcGGCCGCc -3'
miRNA:   3'- gaaGGGCAGUaGcCaGCUCU----UCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 44224 0.68 0.595711
Target:  5'- --gCgCGUCGUCGGaucgUCGAGAuagcGGCCGa -3'
miRNA:   3'- gaaGgGCAGUAGCC----AGCUCU----UCGGCg -5'
17168 5' -54.5 NC_004333.2 + 10124 0.69 0.541286
Target:  5'- -aUCCCGaCAcgcugaagUCGuUCGAGggGCUGCc -3'
miRNA:   3'- gaAGGGCaGU--------AGCcAGCUCuuCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 40307 0.69 0.541286
Target:  5'- --aUUCGUCgAUCGGUUGGccGGCCGCg -3'
miRNA:   3'- gaaGGGCAG-UAGCCAGCUcuUCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 36354 0.69 0.540212
Target:  5'- aUUgCCGUaagCAUCGGUCGuGAuaucccaGGUCGCg -3'
miRNA:   3'- gAAgGGCA---GUAGCCAGCuCU-------UCGGCG- -5'
17168 5' -54.5 NC_004333.2 + 15853 0.7 0.498973
Target:  5'- -gUCCCGUCAUCuuccuuGUgCGAGcccgcgagcGAGCCGCc -3'
miRNA:   3'- gaAGGGCAGUAGc-----CA-GCUC---------UUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.