Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 20896 | 0.66 | 0.716412 |
|
Target: 5'- --gCCCGUCG--GG-CaGGAAGCCGCu -3' miRNA: 3'- gaaGGGCAGUagCCaGcUCUUCGGCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 11126 | 0.66 | 0.716412 |
|
Target: 5'- --gCCCGg---CGGUCGAGAauucgacccgGGCgCGCu -3' miRNA: 3'- gaaGGGCaguaGCCAGCUCU----------UCG-GCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 42003 | 0.66 | 0.727104 |
|
Target: 5'- gCUUCCUGUCggUGcG-CGuGAAGCgCGCg -3' miRNA: 3'- -GAAGGGCAGuaGC-CaGCuCUUCG-GCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 13900 | 0.66 | 0.727104 |
|
Target: 5'- --gCCCGUCGUCGaaccGUCGccGucGCUGCg -3' miRNA: 3'- gaaGGGCAGUAGC----CAGCu-CuuCGGCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 15145 | 0.66 | 0.7377 |
|
Target: 5'- --aCuuGgCGUCGGUUGAGuuGCgGCg -3' miRNA: 3'- gaaGggCaGUAGCCAGCUCuuCGgCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 9058 | 0.66 | 0.7377 |
|
Target: 5'- ---gCCG-CGUCGGUCGcc--GCCGCg -3' miRNA: 3'- gaagGGCaGUAGCCAGCucuuCGGCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 21016 | 0.66 | 0.748189 |
|
Target: 5'- ---gCCGUCA-CGGgCGAcGAaguGGCCGCg -3' miRNA: 3'- gaagGGCAGUaGCCaGCU-CU---UCGGCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 108 | 0.66 | 0.758559 |
|
Target: 5'- --gCCCGUUGUCGuGUCGAGGu-UCGUg -3' miRNA: 3'- gaaGGGCAGUAGC-CAGCUCUucGGCG- -5' |
|||||||
| 17168 | 5' | -54.5 | NC_004333.2 | + | 18777 | 0.66 | 0.762671 |
|
Target: 5'- cCUUCCCGcCAUCGcugaaccgcgcuuaUCGcGcGGCCGCa -3' miRNA: 3'- -GAAGGGCaGUAGCc-------------AGCuCuUCGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home