miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17169 3' -57.2 NC_004333.2 + 14867 0.66 0.575725
Target:  5'- -cGCCGGAG-AGCUGCugCagGCGcGUCa -3'
miRNA:   3'- acUGGCCUCuUCGGCGugGg-CGU-UAG- -5'
17169 3' -57.2 NC_004333.2 + 24847 0.66 0.564831
Target:  5'- cGACCGucGGcGGCCGCACgaaCCGCAc-- -3'
miRNA:   3'- aCUGGCc-UCuUCGGCGUG---GGCGUuag -5'
17169 3' -57.2 NC_004333.2 + 13976 0.66 0.543214
Target:  5'- cGGCCGGuGcgcgcGAGCUGCGCgCGCu-UCu -3'
miRNA:   3'- aCUGGCCuC-----UUCGGCGUGgGCGuuAG- -5'
17169 3' -57.2 NC_004333.2 + 18971 0.66 0.543214
Target:  5'- cGaACCGcGAGAAGCUG-AUCUGCGAUg -3'
miRNA:   3'- aC-UGGC-CUCUUCGGCgUGGGCGUUAg -5'
17169 3' -57.2 NC_004333.2 + 5273 0.66 0.521875
Target:  5'- cGA-CGGugccGAcGCCGCGCCUGCAggCg -3'
miRNA:   3'- aCUgGCCu---CUuCGGCGUGGGCGUuaG- -5'
17169 3' -57.2 NC_004333.2 + 30042 0.67 0.50087
Target:  5'- -cGCCGGuGGcagcgcGGCCGCGCUCgGCAcgCg -3'
miRNA:   3'- acUGGCCuCU------UCGGCGUGGG-CGUuaG- -5'
17169 3' -57.2 NC_004333.2 + 28772 0.67 0.50087
Target:  5'- -uGCCGGA--AGUCGUgcuGCUCGCGAUCu -3'
miRNA:   3'- acUGGCCUcuUCGGCG---UGGGCGUUAG- -5'
17169 3' -57.2 NC_004333.2 + 12362 0.67 0.490507
Target:  5'- cGGUCGGGGgcGCCGUagcGCCCGCc--- -3'
miRNA:   3'- aCUGGCCUCuuCGGCG---UGGGCGuuag -5'
17169 3' -57.2 NC_004333.2 + 20060 0.67 0.490507
Target:  5'- aGGuuGGAuucaguggauGAGGCCGacaGCgCGCAGUCg -3'
miRNA:   3'- aCUggCCU----------CUUCGGCg--UGgGCGUUAG- -5'
17169 3' -57.2 NC_004333.2 + 21167 0.67 0.470089
Target:  5'- aGACCGacggcguucGuGAAGCCGCACgUCGCAu-- -3'
miRNA:   3'- aCUGGC---------CuCUUCGGCGUG-GGCGUuag -5'
17169 3' -57.2 NC_004333.2 + 29977 0.68 0.450114
Target:  5'- cGGCCGaGGAuGCCGCGCgCGgccCGAUCg -3'
miRNA:   3'- aCUGGCcUCUuCGGCGUGgGC---GUUAG- -5'
17169 3' -57.2 NC_004333.2 + 11143 0.68 0.440303
Target:  5'- --cCCGGAaugGGCCGCacGCCCgGCGGUCg -3'
miRNA:   3'- acuGGCCUcu-UCGGCG--UGGG-CGUUAG- -5'
17169 3' -57.2 NC_004333.2 + 20398 0.68 0.440303
Target:  5'- gUGGCCGcAGuGGCCGCG-CCGCucGUCa -3'
miRNA:   3'- -ACUGGCcUCuUCGGCGUgGGCGu-UAG- -5'
17169 3' -57.2 NC_004333.2 + 36903 0.68 0.421052
Target:  5'- cGGCCGGcGAuGGCCGUAgCgCGCAcUCg -3'
miRNA:   3'- aCUGGCCuCU-UCGGCGUgG-GCGUuAG- -5'
17169 3' -57.2 NC_004333.2 + 4715 0.69 0.402318
Target:  5'- -uGCCGGAcucaucggGAuacGUCGCGCCCGCGAg- -3'
miRNA:   3'- acUGGCCU--------CUu--CGGCGUGGGCGUUag -5'
17169 3' -57.2 NC_004333.2 + 41713 0.69 0.384121
Target:  5'- cGGCCGcAGc--CCGCGCCCGaCAAUCu -3'
miRNA:   3'- aCUGGCcUCuucGGCGUGGGC-GUUAG- -5'
17169 3' -57.2 NC_004333.2 + 17580 0.69 0.366479
Target:  5'- cUGAUCGGc-AAGUCGCgcgACUCGCAAUCg -3'
miRNA:   3'- -ACUGGCCucUUCGGCG---UGGGCGUUAG- -5'
17169 3' -57.2 NC_004333.2 + 8708 0.7 0.349403
Target:  5'- cGACCGu-GAcGCCGCucgagUCCGCGAUCa -3'
miRNA:   3'- aCUGGCcuCUuCGGCGu----GGGCGUUAG- -5'
17169 3' -57.2 NC_004333.2 + 44136 0.7 0.349403
Target:  5'- aGGCCGGAcucGGCCGCuauCUCGaCGAUCc -3'
miRNA:   3'- aCUGGCCUcu-UCGGCGu--GGGC-GUUAG- -5'
17169 3' -57.2 NC_004333.2 + 9347 0.7 0.34108
Target:  5'- cGACCGu-GAAGCCGaAUCCGCAGa- -3'
miRNA:   3'- aCUGGCcuCUUCGGCgUGGGCGUUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.