miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17169 5' -54.9 NC_004333.2 + 32200 0.66 0.682641
Target:  5'- -gGA-CGaCGAGCGCGaugagcACGUCgccgaGCGUCu -3'
miRNA:   3'- aaCUaGC-GCUCGCGU------UGCAGa----CGCAG- -5'
17169 5' -54.9 NC_004333.2 + 41618 0.66 0.671438
Target:  5'- -cGGUCGUGAGCaucGCGACG-CUGaCGa- -3'
miRNA:   3'- aaCUAGCGCUCG---CGUUGCaGAC-GCag -5'
17169 5' -54.9 NC_004333.2 + 31551 0.66 0.671438
Target:  5'- aUGuUUGCGuuCGCGGCGUCUGCc-- -3'
miRNA:   3'- aACuAGCGCucGCGUUGCAGACGcag -5'
17169 5' -54.9 NC_004333.2 + 21034 0.66 0.660197
Target:  5'- ----cCGCGccGCGC-GCGUUUGCGUCc -3'
miRNA:   3'- aacuaGCGCu-CGCGuUGCAGACGCAG- -5'
17169 5' -54.9 NC_004333.2 + 25012 0.66 0.660197
Target:  5'- -cGAUUGCGGGUGCGGCuUCUcCGgUCa -3'
miRNA:   3'- aaCUAGCGCUCGCGUUGcAGAcGC-AG- -5'
17169 5' -54.9 NC_004333.2 + 2262 0.66 0.648929
Target:  5'- --aGUUGUucGAGCGCAgcGCGUUUGcCGUCg -3'
miRNA:   3'- aacUAGCG--CUCGCGU--UGCAGAC-GCAG- -5'
17169 5' -54.9 NC_004333.2 + 33403 0.66 0.637644
Target:  5'- -cGAUgccUGCG-GCGCAGCGaCUGCG-Cg -3'
miRNA:   3'- aaCUA---GCGCuCGCGUUGCaGACGCaG- -5'
17169 5' -54.9 NC_004333.2 + 28756 0.66 0.637644
Target:  5'- ----gCGCGAGCGCcGCGUCgaccGCGc- -3'
miRNA:   3'- aacuaGCGCUCGCGuUGCAGa---CGCag -5'
17169 5' -54.9 NC_004333.2 + 6893 0.66 0.637644
Target:  5'- -gGAUCGCG-GCGaCAGCG---GCGUCu -3'
miRNA:   3'- aaCUAGCGCuCGC-GUUGCagaCGCAG- -5'
17169 5' -54.9 NC_004333.2 + 2562 0.66 0.637644
Target:  5'- -cGAUCuCGAG-GCAGCGUCgauCGUCu -3'
miRNA:   3'- aaCUAGcGCUCgCGUUGCAGac-GCAG- -5'
17169 5' -54.9 NC_004333.2 + 13811 0.67 0.626354
Target:  5'- cUGAcgCGCGAGaCGCAGCGaCgGCGa- -3'
miRNA:   3'- aACUa-GCGCUC-GCGUUGCaGaCGCag -5'
17169 5' -54.9 NC_004333.2 + 32613 0.67 0.625225
Target:  5'- gUGAUcgaCGCGAGCGCGccgcgcgACGUCgGCa-- -3'
miRNA:   3'- aACUA---GCGCUCGCGU-------UGCAGaCGcag -5'
17169 5' -54.9 NC_004333.2 + 31387 0.67 0.61507
Target:  5'- --cAUUGCGGGCGCcgUGcUCgGCGUCg -3'
miRNA:   3'- aacUAGCGCUCGCGuuGC-AGaCGCAG- -5'
17169 5' -54.9 NC_004333.2 + 39337 0.67 0.603801
Target:  5'- -cGAUCGCGcGCGCGuGCGcCUGCc-- -3'
miRNA:   3'- aaCUAGCGCuCGCGU-UGCaGACGcag -5'
17169 5' -54.9 NC_004333.2 + 31231 0.67 0.603801
Target:  5'- -cGGUCGCGAcggccGCGCGGCG-CaGCGcCg -3'
miRNA:   3'- aaCUAGCGCU-----CGCGUUGCaGaCGCaG- -5'
17169 5' -54.9 NC_004333.2 + 33270 0.67 0.592557
Target:  5'- aUGAUUGUcaaguucagccGAGCGCGcGCGU-UGCGUCg -3'
miRNA:   3'- aACUAGCG-----------CUCGCGU-UGCAgACGCAG- -5'
17169 5' -54.9 NC_004333.2 + 19492 0.67 0.570185
Target:  5'- gUGAacgUCGCGgguAGCGCGGCGUagGCGUa -3'
miRNA:   3'- aACU---AGCGC---UCGCGUUGCAgaCGCAg -5'
17169 5' -54.9 NC_004333.2 + 17546 0.68 0.515326
Target:  5'- -cGAgcagCGUGAGCGCGGCGgccuucGCGUUg -3'
miRNA:   3'- aaCUa---GCGCUCGCGUUGCaga---CGCAG- -5'
17169 5' -54.9 NC_004333.2 + 27733 0.68 0.515326
Target:  5'- -cGAUCGCG-GCGCGAa-UCUG-GUCg -3'
miRNA:   3'- aaCUAGCGCuCGCGUUgcAGACgCAG- -5'
17169 5' -54.9 NC_004333.2 + 32282 0.68 0.515326
Target:  5'- aUGG-CGCGGGUcggcgGCGAUGUCgacgUGCGUCa -3'
miRNA:   3'- aACUaGCGCUCG-----CGUUGCAG----ACGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.