miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 37807 0.66 0.715894
Target:  5'- uCGAUCuc--GCGCAGgcGCGGCaGCUUGCc -3'
miRNA:   3'- -GCUAGucgaCGCGUU--UGUCG-CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 4940 0.66 0.715894
Target:  5'- uGGUCAGCgGCgGCAGcggcaucggcACGGCGCgC-GCg -3'
miRNA:   3'- gCUAGUCGaCG-CGUU----------UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 39673 0.66 0.715894
Target:  5'- cCGAggCGGC-GCGCuuccugguCGGCcuGCCUGCg -3'
miRNA:   3'- -GCUa-GUCGaCGCGuuu-----GUCG--CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 4841 0.66 0.715894
Target:  5'- -aGUCGGCUGacCGUAcGCGcGCGCCgUGCc -3'
miRNA:   3'- gcUAGUCGAC--GCGUuUGU-CGCGG-ACG- -5'
17170 5' -54.4 NC_004333.2 + 38568 0.66 0.714797
Target:  5'- aCGAcaCAGCUGCuguucGCGGGCaucgugaAGCGCCaGCu -3'
miRNA:   3'- -GCUa-GUCGACG-----CGUUUG-------UCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 21172 0.66 0.70488
Target:  5'- --uUCGcGCUGcCGCAGGCcG-GCCUGCu -3'
miRNA:   3'- gcuAGU-CGAC-GCGUUUGuCgCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 43434 0.66 0.70488
Target:  5'- gGGUCgGGCUgacggacgcGCGCAucGC-GCGCUUGCg -3'
miRNA:   3'- gCUAG-UCGA---------CGCGUu-UGuCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 1492 0.66 0.70488
Target:  5'- aGAUUuGCucgaacUGCGCGagcGACGGCgagucgGCCUGCa -3'
miRNA:   3'- gCUAGuCG------ACGCGU---UUGUCG------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 48019 0.66 0.70488
Target:  5'- aCGAcCAGC-GCGcCGAGCAGCuuGCCgaauaGCa -3'
miRNA:   3'- -GCUaGUCGaCGC-GUUUGUCG--CGGa----CG- -5'
17170 5' -54.4 NC_004333.2 + 36160 0.66 0.70488
Target:  5'- ----uGGCUG-GCGcGCAGCGCC-GCg -3'
miRNA:   3'- gcuagUCGACgCGUuUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 47497 0.66 0.70488
Target:  5'- gGAUUGGC-GCcgGCGAGCGGCGauguagCUGCg -3'
miRNA:   3'- gCUAGUCGaCG--CGUUUGUCGCg-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 45694 0.66 0.693792
Target:  5'- gCGAUCAGCUaccaCAAcGCA-CGCCUGCa -3'
miRNA:   3'- -GCUAGUCGAcgc-GUU-UGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 10511 0.66 0.693792
Target:  5'- uCGA--AGCgGCgGUAAAUGGCGaCCUGCa -3'
miRNA:   3'- -GCUagUCGaCG-CGUUUGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 21972 0.66 0.693792
Target:  5'- ---aCGGUaGCGCAagAACGGCGCCcaauuggggcuaUGCg -3'
miRNA:   3'- gcuaGUCGaCGCGU--UUGUCGCGG------------ACG- -5'
17170 5' -54.4 NC_004333.2 + 32849 0.66 0.693792
Target:  5'- cCGGUCGcaaugcaagguGCcGCGCuuauggccggcGGCAGCGaCCUGCg -3'
miRNA:   3'- -GCUAGU-----------CGaCGCGu----------UUGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 9180 0.66 0.693792
Target:  5'- uCGG-CGGCgacauUGCGCucGACAGCGCaaGCc -3'
miRNA:   3'- -GCUaGUCG-----ACGCGu-UUGUCGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 47461 0.66 0.682641
Target:  5'- uCGAcUAGCaacGCGCcGGCGGCGaCUGCc -3'
miRNA:   3'- -GCUaGUCGa--CGCGuUUGUCGCgGACG- -5'
17170 5' -54.4 NC_004333.2 + 31022 0.66 0.682641
Target:  5'- gCGcugCAGCUGCuGCAGcauguGCGGCacguCCUGCu -3'
miRNA:   3'- -GCua-GUCGACG-CGUU-----UGUCGc---GGACG- -5'
17170 5' -54.4 NC_004333.2 + 6647 0.66 0.682641
Target:  5'- gCGcUCGGCaGCGCGcuCGGCGCgCUcgaGCa -3'
miRNA:   3'- -GCuAGUCGaCGCGUuuGUCGCG-GA---CG- -5'
17170 5' -54.4 NC_004333.2 + 414 0.66 0.681522
Target:  5'- gCGAUCcuugaucaagacaGGCUGCGCG-GCAGUGCggaacGCa -3'
miRNA:   3'- -GCUAG-------------UCGACGCGUuUGUCGCGga---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.