miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 20578 0.66 0.671438
Target:  5'- gGcgCGGCgGCgGCcGGCAGCGgUUGCg -3'
miRNA:   3'- gCuaGUCGaCG-CGuUUGUCGCgGACG- -5'
17170 5' -54.4 NC_004333.2 + 4940 0.66 0.715894
Target:  5'- uGGUCAGCgGCgGCAGcggcaucggcACGGCGCgC-GCg -3'
miRNA:   3'- gCUAGUCGaCG-CGUU----------UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 37807 0.66 0.715894
Target:  5'- uCGAUCuc--GCGCAGgcGCGGCaGCUUGCc -3'
miRNA:   3'- -GCUAGucgaCGCGUU--UGUCG-CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 35667 0.66 0.671438
Target:  5'- uCGGUguGCUGCuC--ACAGCauguggacuGCCUGCa -3'
miRNA:   3'- -GCUAguCGACGcGuuUGUCG---------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 37546 0.66 0.671438
Target:  5'- uCGAUCuGCaUGCGUuuGGCgAGCGCCggaaugucgGCg -3'
miRNA:   3'- -GCUAGuCG-ACGCGu-UUG-UCGCGGa--------CG- -5'
17170 5' -54.4 NC_004333.2 + 25864 0.67 0.626354
Target:  5'- gCGAaucugCAGCagcgcuuggUGCGCGAGCgccaAGCGCC-GCg -3'
miRNA:   3'- -GCUa----GUCG---------ACGCGUUUG----UCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 18606 0.67 0.648929
Target:  5'- gGcgCGGCagGCGCGGGCGGCaacccuuuCCUGUa -3'
miRNA:   3'- gCuaGUCGa-CGCGUUUGUCGc-------GGACG- -5'
17170 5' -54.4 NC_004333.2 + 47606 0.67 0.656819
Target:  5'- --uUCAGCUGCGCGucgccgagaugggcGGCAcguucgauccGCGCgaGCa -3'
miRNA:   3'- gcuAGUCGACGCGU--------------UUGU----------CGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 6391 0.67 0.626354
Target:  5'- gCGGUCguccucacGGCUGCGCAGccuuucacCAGCGCgcucgUUGCg -3'
miRNA:   3'- -GCUAG--------UCGACGCGUUu-------GUCGCG-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 3529 0.67 0.626354
Target:  5'- uGAUCGGCguaaaGCGgGAucaacGCGGUGCC-GCg -3'
miRNA:   3'- gCUAGUCGa----CGCgUU-----UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 14048 0.67 0.660197
Target:  5'- gCGcgCAGCUcGCGCGcacCGGCcGCCgGCc -3'
miRNA:   3'- -GCuaGUCGA-CGCGUuu-GUCG-CGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 38365 0.67 0.660197
Target:  5'- uGAUCGacgcGCUGuCGCGugucGGguGCGCCgGCg -3'
miRNA:   3'- gCUAGU----CGAC-GCGU----UUguCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 45269 0.67 0.648929
Target:  5'- ----gGGCUucgugGCGCGGACAGCuGCCgcUGCg -3'
miRNA:   3'- gcuagUCGA-----CGCGUUUGUCG-CGG--ACG- -5'
17170 5' -54.4 NC_004333.2 + 47140 0.67 0.647801
Target:  5'- aGAUCGcGCUcacguugcGCGCAAACucgaggaAGC-CCUGCa -3'
miRNA:   3'- gCUAGU-CGA--------CGCGUUUG-------UCGcGGACG- -5'
17170 5' -54.4 NC_004333.2 + 6685 0.67 0.637644
Target:  5'- uGAUUAcCUGCGacuGCGGCGCUggGCg -3'
miRNA:   3'- gCUAGUcGACGCguuUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 40813 0.67 0.637644
Target:  5'- uCGAUCAGCaucGCGUucAGgAGCGaCUUGCc -3'
miRNA:   3'- -GCUAGUCGa--CGCGu-UUgUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 25121 0.67 0.660197
Target:  5'- gCGAgcaCGGCgGCGCGcACGuucGCGgCCUGCc -3'
miRNA:   3'- -GCUa--GUCGaCGCGUuUGU---CGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 41740 0.67 0.660197
Target:  5'- aGAUCGGCgcggGCGaCucGC-GCGCCggGCu -3'
miRNA:   3'- gCUAGUCGa---CGC-GuuUGuCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 47798 0.67 0.660197
Target:  5'- aGAUCgcaGGCUgaucGUGCAGcGCGcCGCCUGCg -3'
miRNA:   3'- gCUAG---UCGA----CGCGUU-UGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 6857 0.67 0.660197
Target:  5'- cCGG-CGGCUGCGCAcuGCAuuGCGCa-GCc -3'
miRNA:   3'- -GCUaGUCGACGCGUu-UGU--CGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.