Results 1 - 20 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 25568 | 1.11 | 0.000642 |
Target: 5'- gCGAUCAGCUGCGCAAACAGCGCCUGCc -3' miRNA: 3'- -GCUAGUCGACGCGUUUGUCGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 13656 | 0.82 | 0.078686 |
Target: 5'- uCGggCAGCUGCGCGAGCAGCaCgaGCg -3' miRNA: 3'- -GCuaGUCGACGCGUUUGUCGcGgaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 9028 | 0.79 | 0.136171 |
Target: 5'- aCGAUcCAGCccGCGCAcgcgaugGACAGCGCCgGCg -3' miRNA: 3'- -GCUA-GUCGa-CGCGU-------UUGUCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 19491 | 0.78 | 0.152961 |
Target: 5'- gCGAUCGGCgcugGCGCGcuGGCGGCGCUcGUg -3' miRNA: 3'- -GCUAGUCGa---CGCGU--UUGUCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 20757 | 0.78 | 0.140501 |
Target: 5'- cCGAcgCGGCUGCGCGccugaacgucGACA-CGCCUGCg -3' miRNA: 3'- -GCUa-GUCGACGCGU----------UUGUcGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 5061 | 0.76 | 0.213312 |
Target: 5'- cCGAcgUCGGCgcgGCGCuGAACAGCGUCaGCa -3' miRNA: 3'- -GCU--AGUCGa--CGCG-UUUGUCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 35216 | 0.76 | 0.201995 |
Target: 5'- uGAcCGGaaaUGcCGCAacuGACAGCGCCUGCa -3' miRNA: 3'- gCUaGUCg--AC-GCGU---UUGUCGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 9615 | 0.76 | 0.207587 |
Target: 5'- uCGGcCGGUUGCGCAccggcugccGGCGgcGCGCCUGCg -3' miRNA: 3'- -GCUaGUCGACGCGU---------UUGU--CGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 6838 | 0.76 | 0.196534 |
Target: 5'- gCGAUCGGCUaccucgaggcGCGCGAccGgGGCGCCgugGCg -3' miRNA: 3'- -GCUAGUCGA----------CGCGUU--UgUCGCGGa--CG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 41522 | 0.75 | 0.243353 |
Target: 5'- gGAUCAcgacggccgacucGCccGCGuCGAGCAGCGCCUGUu -3' miRNA: 3'- gCUAGU-------------CGa-CGC-GUUUGUCGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 46414 | 0.75 | 0.250563 |
Target: 5'- ---gCAGCgGCGCAuAACGGCGCCcGCu -3' miRNA: 3'- gcuaGUCGaCGCGU-UUGUCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 12833 | 0.75 | 0.219173 |
Target: 5'- uGAUCAGCggaaUGUGCgAGACGGCGCucauCUGCu -3' miRNA: 3'- gCUAGUCG----ACGCG-UUUGUCGCG----GACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 12292 | 0.75 | 0.237583 |
Target: 5'- cCGG-CGGC-GCGCAuuGCGGCGuCCUGCg -3' miRNA: 3'- -GCUaGUCGaCGCGUu-UGUCGC-GGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 9713 | 0.75 | 0.22517 |
Target: 5'- aCGAaCAGCcggGCGCAGGC-GCGCCgccgGCa -3' miRNA: 3'- -GCUaGUCGa--CGCGUUUGuCGCGGa---CG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 17565 | 0.74 | 0.25727 |
Target: 5'- aGGUCGGUgcggucgaGUGCGAGCAGCGUgaGCg -3' miRNA: 3'- gCUAGUCGa-------CGCGUUUGUCGCGgaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 41808 | 0.74 | 0.278272 |
Target: 5'- cCGGUCaAGCUGCccgacgGCAcGACGGCGCCcgGCc -3' miRNA: 3'- -GCUAG-UCGACG------CGU-UUGUCGCGGa-CG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 40878 | 0.74 | 0.28557 |
Target: 5'- uGAUCAGCUccaucgacgGgGCGAGCGacaugacgcGUGCCUGCg -3' miRNA: 3'- gCUAGUCGA---------CgCGUUUGU---------CGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 20618 | 0.74 | 0.27755 |
Target: 5'- aCGAUCAGCgGCGCGGccauguuACAGgcCGCCaGCg -3' miRNA: 3'- -GCUAGUCGaCGCGUU-------UGUC--GCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 17469 | 0.74 | 0.264123 |
Target: 5'- uGAcCGcGCUGCGCGAGCAGCucgauGCgCUGCu -3' miRNA: 3'- gCUaGU-CGACGCGUUUGUCG-----CG-GACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 45130 | 0.73 | 0.31627 |
Target: 5'- cCGGgcgCGGCcGCGCGGuguuCAGCGUUUGCg -3' miRNA: 3'- -GCUa--GUCGaCGCGUUu---GUCGCGGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home