miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 25568 1.11 0.000642
Target:  5'- gCGAUCAGCUGCGCAAACAGCGCCUGCc -3'
miRNA:   3'- -GCUAGUCGACGCGUUUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 13656 0.82 0.078686
Target:  5'- uCGggCAGCUGCGCGAGCAGCaCgaGCg -3'
miRNA:   3'- -GCuaGUCGACGCGUUUGUCGcGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 9028 0.79 0.136171
Target:  5'- aCGAUcCAGCccGCGCAcgcgaugGACAGCGCCgGCg -3'
miRNA:   3'- -GCUA-GUCGa-CGCGU-------UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 20757 0.78 0.140501
Target:  5'- cCGAcgCGGCUGCGCGccugaacgucGACA-CGCCUGCg -3'
miRNA:   3'- -GCUa-GUCGACGCGU----------UUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 19491 0.78 0.152961
Target:  5'- gCGAUCGGCgcugGCGCGcuGGCGGCGCUcGUg -3'
miRNA:   3'- -GCUAGUCGa---CGCGU--UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 6838 0.76 0.196534
Target:  5'- gCGAUCGGCUaccucgaggcGCGCGAccGgGGCGCCgugGCg -3'
miRNA:   3'- -GCUAGUCGA----------CGCGUU--UgUCGCGGa--CG- -5'
17170 5' -54.4 NC_004333.2 + 35216 0.76 0.201995
Target:  5'- uGAcCGGaaaUGcCGCAacuGACAGCGCCUGCa -3'
miRNA:   3'- gCUaGUCg--AC-GCGU---UUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 9615 0.76 0.207587
Target:  5'- uCGGcCGGUUGCGCAccggcugccGGCGgcGCGCCUGCg -3'
miRNA:   3'- -GCUaGUCGACGCGU---------UUGU--CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 5061 0.76 0.213312
Target:  5'- cCGAcgUCGGCgcgGCGCuGAACAGCGUCaGCa -3'
miRNA:   3'- -GCU--AGUCGa--CGCG-UUUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 12833 0.75 0.219173
Target:  5'- uGAUCAGCggaaUGUGCgAGACGGCGCucauCUGCu -3'
miRNA:   3'- gCUAGUCG----ACGCG-UUUGUCGCG----GACG- -5'
17170 5' -54.4 NC_004333.2 + 9713 0.75 0.22517
Target:  5'- aCGAaCAGCcggGCGCAGGC-GCGCCgccgGCa -3'
miRNA:   3'- -GCUaGUCGa--CGCGUUUGuCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 12292 0.75 0.237583
Target:  5'- cCGG-CGGC-GCGCAuuGCGGCGuCCUGCg -3'
miRNA:   3'- -GCUaGUCGaCGCGUu-UGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 41522 0.75 0.243353
Target:  5'- gGAUCAcgacggccgacucGCccGCGuCGAGCAGCGCCUGUu -3'
miRNA:   3'- gCUAGU-------------CGa-CGC-GUUUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 46414 0.75 0.250563
Target:  5'- ---gCAGCgGCGCAuAACGGCGCCcGCu -3'
miRNA:   3'- gcuaGUCGaCGCGU-UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 17565 0.74 0.25727
Target:  5'- aGGUCGGUgcggucgaGUGCGAGCAGCGUgaGCg -3'
miRNA:   3'- gCUAGUCGa-------CGCGUUUGUCGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 17469 0.74 0.264123
Target:  5'- uGAcCGcGCUGCGCGAGCAGCucgauGCgCUGCu -3'
miRNA:   3'- gCUaGU-CGACGCGUUUGUCG-----CG-GACG- -5'
17170 5' -54.4 NC_004333.2 + 20618 0.74 0.27755
Target:  5'- aCGAUCAGCgGCGCGGccauguuACAGgcCGCCaGCg -3'
miRNA:   3'- -GCUAGUCGaCGCGUU-------UGUC--GCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 41808 0.74 0.278272
Target:  5'- cCGGUCaAGCUGCccgacgGCAcGACGGCGCCcgGCc -3'
miRNA:   3'- -GCUAG-UCGACG------CGU-UUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 40878 0.74 0.28557
Target:  5'- uGAUCAGCUccaucgacgGgGCGAGCGacaugacgcGUGCCUGCg -3'
miRNA:   3'- gCUAGUCGA---------CgCGUUUGU---------CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 2426 0.73 0.291517
Target:  5'- uCGAUCaacuuccAGCUGCGCAAcggccgcACGGUGCUcGCa -3'
miRNA:   3'- -GCUAG-------UCGACGCGUU-------UGUCGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.