miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 38964 0.73 0.300617
Target:  5'- cCGAUCAGC-GCG-AAGCGGCGCgggUGCg -3'
miRNA:   3'- -GCUAGUCGaCGCgUUUGUCGCGg--ACG- -5'
17170 5' -54.4 NC_004333.2 + 44373 0.73 0.300617
Target:  5'- uCGGaCAGgUGCGCugcucGGCGGCGCgUGCg -3'
miRNA:   3'- -GCUaGUCgACGCGu----UUGUCGCGgACG- -5'
17170 5' -54.4 NC_004333.2 + 5171 0.73 0.300617
Target:  5'- aGcgCAGCuUGCGCcugauuGAACAuCGCCUGCa -3'
miRNA:   3'- gCuaGUCG-ACGCG------UUUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 12979 0.73 0.308368
Target:  5'- uGAUCAGCUcggcGCGCAucGACAaaucgacguucGCGCCggGCa -3'
miRNA:   3'- gCUAGUCGA----CGCGU--UUGU-----------CGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 18127 0.73 0.31627
Target:  5'- aGGUCGGaCUGCGCAGcagcggGCAGCGCgaucaGCg -3'
miRNA:   3'- gCUAGUC-GACGCGUU------UGUCGCGga---CG- -5'
17170 5' -54.4 NC_004333.2 + 45130 0.73 0.31627
Target:  5'- cCGGgcgCGGCcGCGCGGuguuCAGCGUUUGCg -3'
miRNA:   3'- -GCUa--GUCGaCGCGUUu---GUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 6946 0.73 0.324324
Target:  5'- gCGAUCcgcucgauGGCUGCGCAAuGCAGUGCgCaGCc -3'
miRNA:   3'- -GCUAG--------UCGACGCGUU-UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 14739 0.73 0.324324
Target:  5'- cCGAcaAGCUGCGCGAAauGCGCC-GCa -3'
miRNA:   3'- -GCUagUCGACGCGUUUguCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 31834 0.72 0.332529
Target:  5'- aGAUCAGC-GUGUAGagcuGCAGCggguuguuuGCCUGCa -3'
miRNA:   3'- gCUAGUCGaCGCGUU----UGUCG---------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 39338 0.72 0.332529
Target:  5'- gCGAUCGcGC-GCGCGu---GCGCCUGCc -3'
miRNA:   3'- -GCUAGU-CGaCGCGUuuguCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 25071 0.72 0.340886
Target:  5'- gCGAUCAGCgugacaggcgGCGCGGACGcagacguuGCGCUcGCg -3'
miRNA:   3'- -GCUAGUCGa---------CGCGUUUGU--------CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 28979 0.72 0.349394
Target:  5'- gCGAUCAGUUGCGCGGccgccgggucgGCGuGCGCaucGCg -3'
miRNA:   3'- -GCUAGUCGACGCGUU-----------UGU-CGCGga-CG- -5'
17170 5' -54.4 NC_004333.2 + 45186 0.72 0.358052
Target:  5'- gCGAUC-GCcGCGCAGACAGgcgucgaguauCGCCUcGCa -3'
miRNA:   3'- -GCUAGuCGaCGCGUUUGUC-----------GCGGA-CG- -5'
17170 5' -54.4 NC_004333.2 + 33690 0.72 0.358052
Target:  5'- ---aCGGCUGCGCAguuuGugAGCGUauCUGCg -3'
miRNA:   3'- gcuaGUCGACGCGU----UugUCGCG--GACG- -5'
17170 5' -54.4 NC_004333.2 + 2373 0.72 0.366859
Target:  5'- uGAUCGacGCgGCGUAgcccauGACGGCGCCgGCg -3'
miRNA:   3'- gCUAGU--CGaCGCGU------UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 33335 0.72 0.370423
Target:  5'- gGAUCAgauucGUUGCGCGAgaACGGCgcgccgucguggaacGCCUGCu -3'
miRNA:   3'- gCUAGU-----CGACGCGUU--UGUCG---------------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 18426 0.72 0.375814
Target:  5'- gCGAUCGGCgGCGUcGACAcCGCgaGCg -3'
miRNA:   3'- -GCUAGUCGaCGCGuUUGUcGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 168 0.71 0.402606
Target:  5'- aCGAUCGGCgccugGCGCGAguccacuGCccguGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCGa----CGCGUU-------UGu---CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 33485 0.71 0.403551
Target:  5'- aCGGuUCGGC-GCGCAGucGCuGCGCCgcagGCa -3'
miRNA:   3'- -GCU-AGUCGaCGCGUU--UGuCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 31236 0.71 0.403551
Target:  5'- gCGA-CGGCcGCGCGGcGCAGCGCCg-- -3'
miRNA:   3'- -GCUaGUCGaCGCGUU-UGUCGCGGacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.