Results 1 - 20 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 37807 | 0.66 | 0.715894 |
Target: 5'- uCGAUCuc--GCGCAGgcGCGGCaGCUUGCc -3' miRNA: 3'- -GCUAGucgaCGCGUU--UGUCG-CGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 4940 | 0.66 | 0.715894 |
Target: 5'- uGGUCAGCgGCgGCAGcggcaucggcACGGCGCgC-GCg -3' miRNA: 3'- gCUAGUCGaCG-CGUU----------UGUCGCG-GaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 39673 | 0.66 | 0.715894 |
Target: 5'- cCGAggCGGC-GCGCuuccugguCGGCcuGCCUGCg -3' miRNA: 3'- -GCUa-GUCGaCGCGuuu-----GUCG--CGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 4841 | 0.66 | 0.715894 |
Target: 5'- -aGUCGGCUGacCGUAcGCGcGCGCCgUGCc -3' miRNA: 3'- gcUAGUCGAC--GCGUuUGU-CGCGG-ACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 38568 | 0.66 | 0.714797 |
Target: 5'- aCGAcaCAGCUGCuguucGCGGGCaucgugaAGCGCCaGCu -3' miRNA: 3'- -GCUa-GUCGACG-----CGUUUG-------UCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 21172 | 0.66 | 0.70488 |
Target: 5'- --uUCGcGCUGcCGCAGGCcG-GCCUGCu -3' miRNA: 3'- gcuAGU-CGAC-GCGUUUGuCgCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 43434 | 0.66 | 0.70488 |
Target: 5'- gGGUCgGGCUgacggacgcGCGCAucGC-GCGCUUGCg -3' miRNA: 3'- gCUAG-UCGA---------CGCGUu-UGuCGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 1492 | 0.66 | 0.70488 |
Target: 5'- aGAUUuGCucgaacUGCGCGagcGACGGCgagucgGCCUGCa -3' miRNA: 3'- gCUAGuCG------ACGCGU---UUGUCG------CGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 48019 | 0.66 | 0.70488 |
Target: 5'- aCGAcCAGC-GCGcCGAGCAGCuuGCCgaauaGCa -3' miRNA: 3'- -GCUaGUCGaCGC-GUUUGUCG--CGGa----CG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 36160 | 0.66 | 0.70488 |
Target: 5'- ----uGGCUG-GCGcGCAGCGCC-GCg -3' miRNA: 3'- gcuagUCGACgCGUuUGUCGCGGaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 47497 | 0.66 | 0.70488 |
Target: 5'- gGAUUGGC-GCcgGCGAGCGGCGauguagCUGCg -3' miRNA: 3'- gCUAGUCGaCG--CGUUUGUCGCg-----GACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 45694 | 0.66 | 0.693792 |
Target: 5'- gCGAUCAGCUaccaCAAcGCA-CGCCUGCa -3' miRNA: 3'- -GCUAGUCGAcgc-GUU-UGUcGCGGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 10511 | 0.66 | 0.693792 |
Target: 5'- uCGA--AGCgGCgGUAAAUGGCGaCCUGCa -3' miRNA: 3'- -GCUagUCGaCG-CGUUUGUCGC-GGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 21972 | 0.66 | 0.693792 |
Target: 5'- ---aCGGUaGCGCAagAACGGCGCCcaauuggggcuaUGCg -3' miRNA: 3'- gcuaGUCGaCGCGU--UUGUCGCGG------------ACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 32849 | 0.66 | 0.693792 |
Target: 5'- cCGGUCGcaaugcaagguGCcGCGCuuauggccggcGGCAGCGaCCUGCg -3' miRNA: 3'- -GCUAGU-----------CGaCGCGu----------UUGUCGC-GGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 9180 | 0.66 | 0.693792 |
Target: 5'- uCGG-CGGCgacauUGCGCucGACAGCGCaaGCc -3' miRNA: 3'- -GCUaGUCG-----ACGCGu-UUGUCGCGgaCG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 47461 | 0.66 | 0.682641 |
Target: 5'- uCGAcUAGCaacGCGCcGGCGGCGaCUGCc -3' miRNA: 3'- -GCUaGUCGa--CGCGuUUGUCGCgGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 31022 | 0.66 | 0.682641 |
Target: 5'- gCGcugCAGCUGCuGCAGcauguGCGGCacguCCUGCu -3' miRNA: 3'- -GCua-GUCGACG-CGUU-----UGUCGc---GGACG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 6647 | 0.66 | 0.682641 |
Target: 5'- gCGcUCGGCaGCGCGcuCGGCGCgCUcgaGCa -3' miRNA: 3'- -GCuAGUCGaCGCGUuuGUCGCG-GA---CG- -5' |
|||||||
17170 | 5' | -54.4 | NC_004333.2 | + | 414 | 0.66 | 0.681522 |
Target: 5'- gCGAUCcuugaucaagacaGGCUGCGCG-GCAGUGCggaacGCa -3' miRNA: 3'- -GCUAG-------------UCGACGCGUuUGUCGCGga---CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home