miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 6685 0.67 0.637644
Target:  5'- uGAUUAcCUGCGacuGCGGCGCUggGCg -3'
miRNA:   3'- gCUAGUcGACGCguuUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 20440 0.67 0.637644
Target:  5'- aCGuUCGGCgGCGCGAAgcCuGCGCCgGUc -3'
miRNA:   3'- -GCuAGUCGaCGCGUUU--GuCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 25864 0.67 0.626354
Target:  5'- gCGAaucugCAGCagcgcuuggUGCGCGAGCgccaAGCGCC-GCg -3'
miRNA:   3'- -GCUa----GUCG---------ACGCGUUUG----UCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 19699 0.67 0.626354
Target:  5'- aCGAUUAuGCUGCucGCGugcuCGGCGCUggugGCg -3'
miRNA:   3'- -GCUAGU-CGACG--CGUuu--GUCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 6391 0.67 0.626354
Target:  5'- gCGGUCguccucacGGCUGCGCAGccuuucacCAGCGCgcucgUUGCg -3'
miRNA:   3'- -GCUAG--------UCGACGCGUUu-------GUCGCG-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 3529 0.67 0.626354
Target:  5'- uGAUCGGCguaaaGCGgGAucaacGCGGUGCC-GCg -3'
miRNA:   3'- gCUAGUCGa----CGCgUU-----UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 8642 0.67 0.621839
Target:  5'- uCGAgcUCGGCgcgGCGCccggcuugcucguGACGGUGCCgucgGCg -3'
miRNA:   3'- -GCU--AGUCGa--CGCGu------------UUGUCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 11873 0.67 0.61507
Target:  5'- cCGGUCGGCcgaaacggGCGCGAGCAccuugucgucGCgGCCcgGCa -3'
miRNA:   3'- -GCUAGUCGa-------CGCGUUUGU----------CG-CGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 37688 0.67 0.61507
Target:  5'- uCGGcCGGCccgGCGCGuGGCGGCucaaugGCCUGCu -3'
miRNA:   3'- -GCUaGUCGa--CGCGU-UUGUCG------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 21947 0.67 0.61507
Target:  5'- cCGGUUguaAGUUGCGCAgaaacgacaAACGGCccGCaCUGCg -3'
miRNA:   3'- -GCUAG---UCGACGCGU---------UUGUCG--CG-GACG- -5'
17170 5' -54.4 NC_004333.2 + 32359 0.68 0.603801
Target:  5'- cCGA-UAGCgUGCGCAGcacgacguuCAGCGCC-GCg -3'
miRNA:   3'- -GCUaGUCG-ACGCGUUu--------GUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 45065 0.68 0.603801
Target:  5'- cCGcgCGGCcGCGCccgggcaagaAAACGGCGgaCUGCg -3'
miRNA:   3'- -GCuaGUCGaCGCG----------UUUGUCGCg-GACG- -5'
17170 5' -54.4 NC_004333.2 + 15348 0.68 0.603801
Target:  5'- uCGAUCucg-GCGCAGACGcGCGCgCUGa -3'
miRNA:   3'- -GCUAGucgaCGCGUUUGU-CGCG-GACg -5'
17170 5' -54.4 NC_004333.2 + 21878 0.68 0.603801
Target:  5'- uGGUUcGCUGCGCAuAGCcccaauugGGCGCCguucuUGCg -3'
miRNA:   3'- gCUAGuCGACGCGU-UUG--------UCGCGG-----ACG- -5'
17170 5' -54.4 NC_004333.2 + 47004 0.68 0.603801
Target:  5'- --cUUGGCUGCGCGcgaggcuucGCGGCGCUcGCg -3'
miRNA:   3'- gcuAGUCGACGCGUu--------UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 12560 0.68 0.600425
Target:  5'- gGAUCAcCUGUuccuGCAcguacaguacguccGACuGCGCCUGCu -3'
miRNA:   3'- gCUAGUcGACG----CGU--------------UUGuCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 23712 0.68 0.592557
Target:  5'- gCGAUUGGCUcGCGCGAGuuGCGUCg-- -3'
miRNA:   3'- -GCUAGUCGA-CGCGUUUguCGCGGacg -5'
17170 5' -54.4 NC_004333.2 + 22483 0.68 0.592557
Target:  5'- uGAUCGG-UGCGC--GCAuGCGCC-GCg -3'
miRNA:   3'- gCUAGUCgACGCGuuUGU-CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 38476 0.68 0.581349
Target:  5'- uGAUUGcGCUGcCGCAAugggacggcacGCAGCGCCUc- -3'
miRNA:   3'- gCUAGU-CGAC-GCGUU-----------UGUCGCGGAcg -5'
17170 5' -54.4 NC_004333.2 + 19873 0.68 0.581349
Target:  5'- uCGGUCAGCaGCGCAucGCAcucaacGCGCg-GCa -3'
miRNA:   3'- -GCUAGUCGaCGCGUu-UGU------CGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.