miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 168 0.71 0.402606
Target:  5'- aCGAUCGGCgccugGCGCGAguccacuGCccguGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCGa----CGCGUU-------UGu---CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 414 0.66 0.681522
Target:  5'- gCGAUCcuugaucaagacaGGCUGCGCG-GCAGUGCggaacGCa -3'
miRNA:   3'- -GCUAG-------------UCGACGCGUuUGUCGCGga---CG- -5'
17170 5' -54.4 NC_004333.2 + 586 0.68 0.548026
Target:  5'- aGAUCGGCaaugGCGCcaucaguaacguAGGCAGUGCCcgacaGCg -3'
miRNA:   3'- gCUAGUCGa---CGCG------------UUUGUCGCGGa----CG- -5'
17170 5' -54.4 NC_004333.2 + 914 0.69 0.526144
Target:  5'- uGGUCGGCauUGCGCccucguAGCGuGCGCC-GCg -3'
miRNA:   3'- gCUAGUCG--ACGCGu-----UUGU-CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 1492 0.66 0.70488
Target:  5'- aGAUUuGCucgaacUGCGCGagcGACGGCgagucgGCCUGCa -3'
miRNA:   3'- gCUAGuCG------ACGCGU---UUGUCG------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 1662 0.67 0.659072
Target:  5'- -----cGCUGCGCGgucggaAACAGCGCUuccgucgUGCa -3'
miRNA:   3'- gcuaguCGACGCGU------UUGUCGCGG-------ACG- -5'
17170 5' -54.4 NC_004333.2 + 2373 0.72 0.366859
Target:  5'- uGAUCGacGCgGCGUAgcccauGACGGCGCCgGCg -3'
miRNA:   3'- gCUAGU--CGaCGCGU------UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 2426 0.73 0.291517
Target:  5'- uCGAUCaacuuccAGCUGCGCAAcggccgcACGGUGCUcGCa -3'
miRNA:   3'- -GCUAG-------UCGACGCGUU-------UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 2958 0.71 0.41308
Target:  5'- ---gCAGCUGCGCGAGCGuGaCGCCcGUc -3'
miRNA:   3'- gcuaGUCGACGCGUUUGU-C-GCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 3529 0.67 0.626354
Target:  5'- uGAUCGGCguaaaGCGgGAucaacGCGGUGCC-GCg -3'
miRNA:   3'- gCUAGUCGa----CGCgUU-----UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 4841 0.66 0.715894
Target:  5'- -aGUCGGCUGacCGUAcGCGcGCGCCgUGCc -3'
miRNA:   3'- gcUAGUCGAC--GCGUuUGU-CGCGG-ACG- -5'
17170 5' -54.4 NC_004333.2 + 4940 0.66 0.715894
Target:  5'- uGGUCAGCgGCgGCAGcggcaucggcACGGCGCgC-GCg -3'
miRNA:   3'- gCUAGUCGaCG-CGUU----------UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 5061 0.76 0.213312
Target:  5'- cCGAcgUCGGCgcgGCGCuGAACAGCGUCaGCa -3'
miRNA:   3'- -GCU--AGUCGa--CGCG-UUUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 5171 0.73 0.300617
Target:  5'- aGcgCAGCuUGCGCcugauuGAACAuCGCCUGCa -3'
miRNA:   3'- gCuaGUCG-ACGCG------UUUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 5282 0.67 0.637644
Target:  5'- cCGAguuuGCgacgGUGCcGACGccGCGCCUGCa -3'
miRNA:   3'- -GCUagu-CGa---CGCGuUUGU--CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 6391 0.67 0.626354
Target:  5'- gCGGUCguccucacGGCUGCGCAGccuuucacCAGCGCgcucgUUGCg -3'
miRNA:   3'- -GCUAG--------UCGACGCGUUu-------GUCGCG-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 6647 0.66 0.682641
Target:  5'- gCGcUCGGCaGCGCGcuCGGCGCgCUcgaGCa -3'
miRNA:   3'- -GCuAGUCGaCGCGUuuGUCGCG-GA---CG- -5'
17170 5' -54.4 NC_004333.2 + 6685 0.67 0.637644
Target:  5'- uGAUUAcCUGCGacuGCGGCGCUggGCg -3'
miRNA:   3'- gCUAGUcGACGCguuUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 6838 0.76 0.196534
Target:  5'- gCGAUCGGCUaccucgaggcGCGCGAccGgGGCGCCgugGCg -3'
miRNA:   3'- -GCUAGUCGA----------CGCGUU--UgUCGCGGa--CG- -5'
17170 5' -54.4 NC_004333.2 + 6857 0.67 0.660197
Target:  5'- cCGG-CGGCUGCGCAcuGCAuuGCGCa-GCc -3'
miRNA:   3'- -GCUaGUCGACGCGUu-UGU--CGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.