miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 6946 0.73 0.324324
Target:  5'- gCGAUCcgcucgauGGCUGCGCAAuGCAGUGCgCaGCc -3'
miRNA:   3'- -GCUAG--------UCGACGCGUU-UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 7276 0.69 0.515326
Target:  5'- cCGAUCAuCUGCGCG-ACGGCGaacggGCg -3'
miRNA:   3'- -GCUAGUcGACGCGUuUGUCGCgga--CG- -5'
17170 5' -54.4 NC_004333.2 + 8642 0.67 0.621839
Target:  5'- uCGAgcUCGGCgcgGCGCccggcuugcucguGACGGUGCCgucgGCg -3'
miRNA:   3'- -GCU--AGUCGa--CGCGu------------UUGUCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 8952 0.68 0.548026
Target:  5'- aGAUCAaGgUGCGCGgcuAACcGCGCC-GCa -3'
miRNA:   3'- gCUAGU-CgACGCGU---UUGuCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 9028 0.79 0.136171
Target:  5'- aCGAUcCAGCccGCGCAcgcgaugGACAGCGCCgGCg -3'
miRNA:   3'- -GCUA-GUCGa-CGCGU-------UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 9180 0.66 0.693792
Target:  5'- uCGG-CGGCgacauUGCGCucGACAGCGCaaGCc -3'
miRNA:   3'- -GCUaGUCG-----ACGCGu-UUGUCGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 9227 0.66 0.671438
Target:  5'- gCGcgCAGCUGCggucgaGCAGGCaaAGCGCgacgUGCg -3'
miRNA:   3'- -GCuaGUCGACG------CGUUUG--UCGCGg---ACG- -5'
17170 5' -54.4 NC_004333.2 + 9615 0.76 0.207587
Target:  5'- uCGGcCGGUUGCGCAccggcugccGGCGgcGCGCCUGCg -3'
miRNA:   3'- -GCUaGUCGACGCGU---------UUGU--CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 9713 0.75 0.22517
Target:  5'- aCGAaCAGCcggGCGCAGGC-GCGCCgccgGCa -3'
miRNA:   3'- -GCUaGUCGa--CGCGUUUGuCGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 10511 0.66 0.693792
Target:  5'- uCGA--AGCgGCgGUAAAUGGCGaCCUGCa -3'
miRNA:   3'- -GCUagUCGaCG-CGUUUGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 10927 0.68 0.559075
Target:  5'- cCGcgCGGCgucaaGCGCGuGACAGCGUacUUGCg -3'
miRNA:   3'- -GCuaGUCGa----CGCGU-UUGUCGCG--GACG- -5'
17170 5' -54.4 NC_004333.2 + 11804 0.7 0.473027
Target:  5'- cCGGUCGGCUGC-CGGACAucgcgcagGaCGCCaGCa -3'
miRNA:   3'- -GCUAGUCGACGcGUUUGU--------C-GCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 11873 0.67 0.61507
Target:  5'- cCGGUCGGCcgaaacggGCGCGAGCAccuugucgucGCgGCCcgGCa -3'
miRNA:   3'- -GCUAGUCGa-------CGCGUUUGU----------CG-CGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 12292 0.75 0.237583
Target:  5'- cCGG-CGGC-GCGCAuuGCGGCGuCCUGCg -3'
miRNA:   3'- -GCUaGUCGaCGCGUu-UGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 12361 0.7 0.442481
Target:  5'- aCGGUCGGggGCGCcg-UAGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCgaCGCGuuuGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 12560 0.68 0.600425
Target:  5'- gGAUCAcCUGUuccuGCAcguacaguacguccGACuGCGCCUGCu -3'
miRNA:   3'- gCUAGUcGACG----CGU--------------UUGuCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 12833 0.75 0.219173
Target:  5'- uGAUCAGCggaaUGUGCgAGACGGCGCucauCUGCu -3'
miRNA:   3'- gCUAGUCG----ACGCG-UUUGUCGCG----GACG- -5'
17170 5' -54.4 NC_004333.2 + 12979 0.73 0.308368
Target:  5'- uGAUCAGCUcggcGCGCAucGACAaaucgacguucGCGCCggGCa -3'
miRNA:   3'- gCUAGUCGA----CGCGU--UUGU-----------CGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 13287 0.66 0.680404
Target:  5'- uGAUCGGCaccgaaguccaCGCGAc--GCGCCUGCa -3'
miRNA:   3'- gCUAGUCGac---------GCGUUuguCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 13656 0.82 0.078686
Target:  5'- uCGggCAGCUGCGCGAGCAGCaCgaGCg -3'
miRNA:   3'- -GCuaGUCGACGCGUUUGUCGcGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.