miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 48019 0.66 0.70488
Target:  5'- aCGAcCAGC-GCGcCGAGCAGCuuGCCgaauaGCa -3'
miRNA:   3'- -GCUaGUCGaCGC-GUUUGUCG--CGGa----CG- -5'
17170 5' -54.4 NC_004333.2 + 47891 0.69 0.537046
Target:  5'- aGA--AGCgccgucCGCAGGCGGCGCgCUGCa -3'
miRNA:   3'- gCUagUCGac----GCGUUUGUCGCG-GACG- -5'
17170 5' -54.4 NC_004333.2 + 47798 0.67 0.660197
Target:  5'- aGAUCgcaGGCUgaucGUGCAGcGCGcCGCCUGCg -3'
miRNA:   3'- gCUAG---UCGA----CGCGUU-UGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 47606 0.67 0.656819
Target:  5'- --uUCAGCUGCGCGucgccgagaugggcGGCAcguucgauccGCGCgaGCa -3'
miRNA:   3'- gcuAGUCGACGCGU--------------UUGU----------CGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 47497 0.66 0.70488
Target:  5'- gGAUUGGC-GCcgGCGAGCGGCGauguagCUGCg -3'
miRNA:   3'- gCUAGUCGaCG--CGUUUGUCGCg-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 47461 0.66 0.682641
Target:  5'- uCGAcUAGCaacGCGCcGGCGGCGaCUGCc -3'
miRNA:   3'- -GCUaGUCGa--CGCGuUUGUCGCgGACG- -5'
17170 5' -54.4 NC_004333.2 + 47395 0.69 0.526144
Target:  5'- uCGAucUCGGCUuuCGU--GCGGCGCUUGCg -3'
miRNA:   3'- -GCU--AGUCGAc-GCGuuUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 47140 0.67 0.647801
Target:  5'- aGAUCGcGCUcacguugcGCGCAAACucgaggaAGC-CCUGCa -3'
miRNA:   3'- gCUAGU-CGA--------CGCGUUUG-------UCGcGGACG- -5'
17170 5' -54.4 NC_004333.2 + 47004 0.68 0.603801
Target:  5'- --cUUGGCUGCGCGcgaggcuucGCGGCGCUcGCg -3'
miRNA:   3'- gcuAGUCGACGCGUu--------UGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 46414 0.75 0.250563
Target:  5'- ---gCAGCgGCGCAuAACGGCGCCcGCu -3'
miRNA:   3'- gcuaGUCGaCGCGU-UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 45694 0.66 0.693792
Target:  5'- gCGAUCAGCUaccaCAAcGCA-CGCCUGCa -3'
miRNA:   3'- -GCUAGUCGAcgc-GUU-UGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 45269 0.67 0.648929
Target:  5'- ----gGGCUucgugGCGCGGACAGCuGCCgcUGCg -3'
miRNA:   3'- gcuagUCGA-----CGCGUUUGUCG-CGG--ACG- -5'
17170 5' -54.4 NC_004333.2 + 45186 0.72 0.358052
Target:  5'- gCGAUC-GCcGCGCAGACAGgcgucgaguauCGCCUcGCa -3'
miRNA:   3'- -GCUAGuCGaCGCGUUUGUC-----------GCGGA-CG- -5'
17170 5' -54.4 NC_004333.2 + 45130 0.73 0.31627
Target:  5'- cCGGgcgCGGCcGCGCGGuguuCAGCGUUUGCg -3'
miRNA:   3'- -GCUa--GUCGaCGCGUUu---GUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 45065 0.68 0.603801
Target:  5'- cCGcgCGGCcGCGCccgggcaagaAAACGGCGgaCUGCg -3'
miRNA:   3'- -GCuaGUCGaCGCG----------UUUGUCGCg-GACG- -5'
17170 5' -54.4 NC_004333.2 + 44960 0.68 0.546924
Target:  5'- uCGAUCAGCUgGCGCAGcgagucggGCAgguugucGCGCgCgGCg -3'
miRNA:   3'- -GCUAGUCGA-CGCGUU--------UGU-------CGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 44373 0.73 0.300617
Target:  5'- uCGGaCAGgUGCGCugcucGGCGGCGCgUGCg -3'
miRNA:   3'- -GCUaGUCgACGCGu----UUGUCGCGgACG- -5'
17170 5' -54.4 NC_004333.2 + 43529 0.68 0.559075
Target:  5'- uCGAUugCGGC-GCGCAAGC-GCGCgaUGCg -3'
miRNA:   3'- -GCUA--GUCGaCGCGUUUGuCGCGg-ACG- -5'
17170 5' -54.4 NC_004333.2 + 43466 0.69 0.537046
Target:  5'- gCGggCGGCUGCGgGAccAUAGCGaUUGCg -3'
miRNA:   3'- -GCuaGUCGACGCgUU--UGUCGCgGACG- -5'
17170 5' -54.4 NC_004333.2 + 43434 0.66 0.70488
Target:  5'- gGGUCgGGCUgacggacgcGCGCAucGC-GCGCUUGCg -3'
miRNA:   3'- gCUAG-UCGA---------CGCGUu-UGuCGCGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.