miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 25568 1.11 0.000642
Target:  5'- gCGAUCAGCUGCGCAAACAGCGCCUGCc -3'
miRNA:   3'- -GCUAGUCGACGCGUUUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 18426 0.72 0.375814
Target:  5'- gCGAUCGGCgGCGUcGACAcCGCgaGCg -3'
miRNA:   3'- -GCUAGUCGaCGCGuUUGUcGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 31236 0.71 0.403551
Target:  5'- gCGA-CGGCcGCGCGGcGCAGCGCCg-- -3'
miRNA:   3'- -GCUaGUCGaCGCGUU-UGUCGCGGacg -5'
17170 5' -54.4 NC_004333.2 + 39673 0.66 0.715894
Target:  5'- cCGAggCGGC-GCGCuuccugguCGGCcuGCCUGCg -3'
miRNA:   3'- -GCUa-GUCGaCGCGuuu-----GUCG--CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 35216 0.76 0.201995
Target:  5'- uGAcCGGaaaUGcCGCAacuGACAGCGCCUGCa -3'
miRNA:   3'- gCUaGUCg--AC-GCGU---UUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 9615 0.76 0.207587
Target:  5'- uCGGcCGGUUGCGCAccggcugccGGCGgcGCGCCUGCg -3'
miRNA:   3'- -GCUaGUCGACGCGU---------UUGU--CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 12833 0.75 0.219173
Target:  5'- uGAUCAGCggaaUGUGCgAGACGGCGCucauCUGCu -3'
miRNA:   3'- gCUAGUCG----ACGCG-UUUGUCGCG----GACG- -5'
17170 5' -54.4 NC_004333.2 + 12292 0.75 0.237583
Target:  5'- cCGG-CGGC-GCGCAuuGCGGCGuCCUGCg -3'
miRNA:   3'- -GCUaGUCGaCGCGUu-UGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 44373 0.73 0.300617
Target:  5'- uCGGaCAGgUGCGCugcucGGCGGCGCgUGCg -3'
miRNA:   3'- -GCUaGUCgACGCGu----UUGUCGCGgACG- -5'
17170 5' -54.4 NC_004333.2 + 33335 0.72 0.370423
Target:  5'- gGAUCAgauucGUUGCGCGAgaACGGCgcgccgucguggaacGCCUGCu -3'
miRNA:   3'- gCUAGU-----CGACGCGUU--UGUCG---------------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 31834 0.72 0.332529
Target:  5'- aGAUCAGC-GUGUAGagcuGCAGCggguuguuuGCCUGCa -3'
miRNA:   3'- gCUAGUCGaCGCGUU----UGUCG---------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 5171 0.73 0.300617
Target:  5'- aGcgCAGCuUGCGCcugauuGAACAuCGCCUGCa -3'
miRNA:   3'- gCuaGUCG-ACGCG------UUUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 13656 0.82 0.078686
Target:  5'- uCGggCAGCUGCGCGAGCAGCaCgaGCg -3'
miRNA:   3'- -GCuaGUCGACGCGUUUGUCGcGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 28979 0.72 0.349394
Target:  5'- gCGAUCAGUUGCGCGGccgccgggucgGCGuGCGCaucGCg -3'
miRNA:   3'- -GCUAGUCGACGCGUU-----------UGU-CGCGga-CG- -5'
17170 5' -54.4 NC_004333.2 + 20757 0.78 0.140501
Target:  5'- cCGAcgCGGCUGCGCGccugaacgucGACA-CGCCUGCg -3'
miRNA:   3'- -GCUa-GUCGACGCGU----------UUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 41808 0.74 0.278272
Target:  5'- cCGGUCaAGCUGCccgacgGCAcGACGGCGCCcgGCc -3'
miRNA:   3'- -GCUAG-UCGACG------CGU-UUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 2373 0.72 0.366859
Target:  5'- uGAUCGacGCgGCGUAgcccauGACGGCGCCgGCg -3'
miRNA:   3'- gCUAGU--CGaCGCGU------UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 168 0.71 0.402606
Target:  5'- aCGAUCGGCgccugGCGCGAguccacuGCccguGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCGa----CGCGUU-------UGu---CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 19491 0.78 0.152961
Target:  5'- gCGAUCGGCgcugGCGCGcuGGCGGCGCUcGUg -3'
miRNA:   3'- -GCUAGUCGa---CGCGU--UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 5061 0.76 0.213312
Target:  5'- cCGAcgUCGGCgcgGCGCuGAACAGCGUCaGCa -3'
miRNA:   3'- -GCU--AGUCGa--CGCG-UUUGUCGCGGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.