miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 28740 0.7 0.441482
Target:  5'- aGGUCGGCcagcaacUGCGCGAGCGccGCGUCgaccGCg -3'
miRNA:   3'- gCUAGUCG-------ACGCGUUUGU--CGCGGa---CG- -5'
17170 5' -54.4 NC_004333.2 + 31236 0.71 0.403551
Target:  5'- gCGA-CGGCcGCGCGGcGCAGCGCCg-- -3'
miRNA:   3'- -GCUaGUCGaCGCGUU-UGUCGCGGacg -5'
17170 5' -54.4 NC_004333.2 + 5171 0.73 0.300617
Target:  5'- aGcgCAGCuUGCGCcugauuGAACAuCGCCUGCa -3'
miRNA:   3'- gCuaGUCG-ACGCG------UUUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 19491 0.78 0.152961
Target:  5'- gCGAUCGGCgcugGCGCGcuGGCGGCGCUcGUg -3'
miRNA:   3'- -GCUAGUCGa---CGCGU--UUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 29017 0.68 0.557967
Target:  5'- nCGcgCGGCUagcacgauaaccaGCGCGAGCAccGCGCC-GCc -3'
miRNA:   3'- -GCuaGUCGA-------------CGCGUUUGU--CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 35551 0.69 0.513173
Target:  5'- gCGGUCAGaacuuggcccgGUGCGAACuGCGCaaaUGCa -3'
miRNA:   3'- -GCUAGUCga---------CGCGUUUGuCGCGg--ACG- -5'
17170 5' -54.4 NC_004333.2 + 18426 0.72 0.375814
Target:  5'- gCGAUCGGCgGCGUcGACAcCGCgaGCg -3'
miRNA:   3'- -GCUAGUCGaCGCGuUUGUcGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 20757 0.78 0.140501
Target:  5'- cCGAcgCGGCUGCGCGccugaacgucGACA-CGCCUGCg -3'
miRNA:   3'- -GCUa-GUCGACGCGU----------UUGUcGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 36127 0.69 0.491856
Target:  5'- gCGA-CGGcCUGCGCGAccggcgcaaccuucaACgccucguugacguagAGCGCCUGCa -3'
miRNA:   3'- -GCUaGUC-GACGCGUU---------------UG---------------UCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 13656 0.82 0.078686
Target:  5'- uCGggCAGCUGCGCGAGCAGCaCgaGCg -3'
miRNA:   3'- -GCuaGUCGACGCGUUUGUCGcGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 168 0.71 0.402606
Target:  5'- aCGAUCGGCgccugGCGCGAguccacuGCccguGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCGa----CGCGUU-------UGu---CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 12361 0.7 0.442481
Target:  5'- aCGGUCGGggGCGCcg-UAGCGCCcGCc -3'
miRNA:   3'- -GCUAGUCgaCGCGuuuGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 28979 0.72 0.349394
Target:  5'- gCGAUCAGUUGCGCGGccgccgggucgGCGuGCGCaucGCg -3'
miRNA:   3'- -GCUAGUCGACGCGUU-----------UGU-CGCGga-CG- -5'
17170 5' -54.4 NC_004333.2 + 44373 0.73 0.300617
Target:  5'- uCGGaCAGgUGCGCugcucGGCGGCGCgUGCg -3'
miRNA:   3'- -GCUaGUCgACGCGu----UUGUCGCGgACG- -5'
17170 5' -54.4 NC_004333.2 + 12833 0.75 0.219173
Target:  5'- uGAUCAGCggaaUGUGCgAGACGGCGCucauCUGCu -3'
miRNA:   3'- gCUAGUCG----ACGCG-UUUGUCGCG----GACG- -5'
17170 5' -54.4 NC_004333.2 + 35216 0.76 0.201995
Target:  5'- uGAcCGGaaaUGcCGCAacuGACAGCGCCUGCa -3'
miRNA:   3'- gCUaGUCg--AC-GCGU---UUGUCGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 23712 0.68 0.592557
Target:  5'- gCGAUUGGCUcGCGCGAGuuGCGUCg-- -3'
miRNA:   3'- -GCUAGUCGA-CGCGUUUguCGCGGacg -5'
17170 5' -54.4 NC_004333.2 + 15465 0.68 0.570185
Target:  5'- uCGAUCGGC-GCGCuuGGC-GUGCCgaGCg -3'
miRNA:   3'- -GCUAGUCGaCGCGu-UUGuCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 914 0.69 0.526144
Target:  5'- uGGUCGGCauUGCGCccucguAGCGuGCGCC-GCg -3'
miRNA:   3'- gCUAGUCG--ACGCGu-----UUGU-CGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 13904 0.69 0.515326
Target:  5'- ----gGGCUGCGC-GGCGGCuGCCgugGCg -3'
miRNA:   3'- gcuagUCGACGCGuUUGUCG-CGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.