miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17170 5' -54.4 NC_004333.2 + 6391 0.67 0.626354
Target:  5'- gCGGUCguccucacGGCUGCGCAGccuuucacCAGCGCgcucgUUGCg -3'
miRNA:   3'- -GCUAG--------UCGACGCGUUu-------GUCGCG-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 9227 0.66 0.671438
Target:  5'- gCGcgCAGCUGCggucgaGCAGGCaaAGCGCgacgUGCg -3'
miRNA:   3'- -GCuaGUCGACG------CGUUUG--UCGCGg---ACG- -5'
17170 5' -54.4 NC_004333.2 + 14048 0.67 0.660197
Target:  5'- gCGcgCAGCUcGCGCGcacCGGCcGCCgGCc -3'
miRNA:   3'- -GCuaGUCGA-CGCGUuu-GUCG-CGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 45269 0.67 0.648929
Target:  5'- ----gGGCUucgugGCGCGGACAGCuGCCgcUGCg -3'
miRNA:   3'- gcuagUCGA-----CGCGUUUGUCG-CGG--ACG- -5'
17170 5' -54.4 NC_004333.2 + 47140 0.67 0.647801
Target:  5'- aGAUCGcGCUcacguugcGCGCAAACucgaggaAGC-CCUGCa -3'
miRNA:   3'- gCUAGU-CGA--------CGCGUUUG-------UCGcGGACG- -5'
17170 5' -54.4 NC_004333.2 + 5282 0.67 0.637644
Target:  5'- cCGAguuuGCgacgGUGCcGACGccGCGCCUGCa -3'
miRNA:   3'- -GCUagu-CGa---CGCGuUUGU--CGCGGACG- -5'
17170 5' -54.4 NC_004333.2 + 39950 0.67 0.637644
Target:  5'- gCGuuuUCGGUUGCgGCAcguACGGCGCCg-- -3'
miRNA:   3'- -GCu--AGUCGACG-CGUu--UGUCGCGGacg -5'
17170 5' -54.4 NC_004333.2 + 6685 0.67 0.637644
Target:  5'- uGAUUAcCUGCGacuGCGGCGCUggGCg -3'
miRNA:   3'- gCUAGUcGACGCguuUGUCGCGGa-CG- -5'
17170 5' -54.4 NC_004333.2 + 40813 0.67 0.637644
Target:  5'- uCGAUCAGCaucGCGUucAGgAGCGaCUUGCc -3'
miRNA:   3'- -GCUAGUCGa--CGCGu-UUgUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 37546 0.66 0.671438
Target:  5'- uCGAUCuGCaUGCGUuuGGCgAGCGCCggaaugucgGCg -3'
miRNA:   3'- -GCUAGuCG-ACGCGu-UUG-UCGCGGa--------CG- -5'
17170 5' -54.4 NC_004333.2 + 35667 0.66 0.671438
Target:  5'- uCGGUguGCUGCuC--ACAGCauguggacuGCCUGCa -3'
miRNA:   3'- -GCUAguCGACGcGuuUGUCG---------CGGACG- -5'
17170 5' -54.4 NC_004333.2 + 20578 0.66 0.671438
Target:  5'- gGcgCGGCgGCgGCcGGCAGCGgUUGCg -3'
miRNA:   3'- gCuaGUCGaCG-CGuUUGUCGCgGACG- -5'
17170 5' -54.4 NC_004333.2 + 4940 0.66 0.715894
Target:  5'- uGGUCAGCgGCgGCAGcggcaucggcACGGCGCgC-GCg -3'
miRNA:   3'- gCUAGUCGaCG-CGUU----------UGUCGCG-GaCG- -5'
17170 5' -54.4 NC_004333.2 + 48019 0.66 0.70488
Target:  5'- aCGAcCAGC-GCGcCGAGCAGCuuGCCgaauaGCa -3'
miRNA:   3'- -GCUaGUCGaCGC-GUUUGUCG--CGGa----CG- -5'
17170 5' -54.4 NC_004333.2 + 47497 0.66 0.70488
Target:  5'- gGAUUGGC-GCcgGCGAGCGGCGauguagCUGCg -3'
miRNA:   3'- gCUAGUCGaCG--CGUUUGUCGCg-----GACG- -5'
17170 5' -54.4 NC_004333.2 + 36160 0.66 0.70488
Target:  5'- ----uGGCUG-GCGcGCAGCGCC-GCg -3'
miRNA:   3'- gcuagUCGACgCGUuUGUCGCGGaCG- -5'
17170 5' -54.4 NC_004333.2 + 21972 0.66 0.693792
Target:  5'- ---aCGGUaGCGCAagAACGGCGCCcaauuggggcuaUGCg -3'
miRNA:   3'- gcuaGUCGaCGCGU--UUGUCGCGG------------ACG- -5'
17170 5' -54.4 NC_004333.2 + 32849 0.66 0.693792
Target:  5'- cCGGUCGcaaugcaagguGCcGCGCuuauggccggcGGCAGCGaCCUGCg -3'
miRNA:   3'- -GCUAGU-----------CGaCGCGu----------UUGUCGC-GGACG- -5'
17170 5' -54.4 NC_004333.2 + 9180 0.66 0.693792
Target:  5'- uCGG-CGGCgacauUGCGCucGACAGCGCaaGCc -3'
miRNA:   3'- -GCUaGUCG-----ACGCGu-UUGUCGCGgaCG- -5'
17170 5' -54.4 NC_004333.2 + 13287 0.66 0.680404
Target:  5'- uGAUCGGCaccgaaguccaCGCGAc--GCGCCUGCa -3'
miRNA:   3'- gCUAGUCGac---------GCGUUuguCGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.