miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 3' -52.6 NC_004333.2 + 9343 0.66 0.802469
Target:  5'- uUUCAuGCUCGUCgucggCGCGCGGCgucggGcCUUCu -3'
miRNA:   3'- cAAGU-CGAGUAG-----GUGCGCUGa----C-GAAG- -5'
17171 3' -52.6 NC_004333.2 + 28874 0.66 0.792375
Target:  5'- -cUCAagcGCUCGUgCCGCGCGAUcGCg-- -3'
miRNA:   3'- caAGU---CGAGUA-GGUGCGCUGaCGaag -5'
17171 3' -52.6 NC_004333.2 + 18632 0.66 0.792375
Target:  5'- gGUUCGGaUUCGccgCCGCGCcGGCUGCcgCa -3'
miRNA:   3'- -CAAGUC-GAGUa--GGUGCG-CUGACGaaG- -5'
17171 3' -52.6 NC_004333.2 + 17703 0.67 0.739433
Target:  5'- aGUUguGCUUA-CCGCGCGGC--CUUCg -3'
miRNA:   3'- -CAAguCGAGUaGGUGCGCUGacGAAG- -5'
17171 3' -52.6 NC_004333.2 + 13285 0.67 0.739433
Target:  5'- -aUCGGCaccgaaGUCCACGCGAC-GCg-- -3'
miRNA:   3'- caAGUCGag----UAGGUGCGCUGaCGaag -5'
17171 3' -52.6 NC_004333.2 + 7823 0.67 0.706151
Target:  5'- aGUUUAGCUCGcucgccagaUCgACGCGGcCUGCg-- -3'
miRNA:   3'- -CAAGUCGAGU---------AGgUGCGCU-GACGaag -5'
17171 3' -52.6 NC_004333.2 + 29002 0.68 0.649272
Target:  5'- -gUCGGCgugcgCAUCgCGCGCGGCUaGCa-- -3'
miRNA:   3'- caAGUCGa----GUAG-GUGCGCUGA-CGaag -5'
17171 3' -52.6 NC_004333.2 + 33935 0.69 0.637797
Target:  5'- -aUCAGCUUGUCUACGCcaGACgGCa-- -3'
miRNA:   3'- caAGUCGAGUAGGUGCG--CUGaCGaag -5'
17171 3' -52.6 NC_004333.2 + 5552 0.69 0.614841
Target:  5'- aUUCAGgUCGUCUACGCcgaagcgaaguGGCUGCg-- -3'
miRNA:   3'- cAAGUCgAGUAGGUGCG-----------CUGACGaag -5'
17171 3' -52.6 NC_004333.2 + 10009 0.76 0.273877
Target:  5'- -gUCGGC-CGUCUGCGCGACgUGCUUg -3'
miRNA:   3'- caAGUCGaGUAGGUGCGCUG-ACGAAg -5'
17171 3' -52.6 NC_004333.2 + 26239 1.1 0.001058
Target:  5'- gGUUCAGCUCAUCCACGCGACUGCUUCg -3'
miRNA:   3'- -CAAGUCGAGUAGGUGCGCUGACGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.