miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 247 0.67 0.36908
Target:  5'- cGGGCAGUGgacucgcgccaGGCGCcgaucguGUGCuCGCGCCg -3'
miRNA:   3'- -UCCGUCAUaca--------CCGCG-------CGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9290 0.67 0.373382
Target:  5'- cGGCGcgAUGgaugcgaagucGGUGCGCACCGCGaUCg -3'
miRNA:   3'- uCCGUcaUACa----------CCGCGCGUGGCGC-GG- -5'
17171 5' -59.6 NC_004333.2 + 41647 0.66 0.427597
Target:  5'- cAGGCAGUcaacgaaUGGCGCGUugaaGCCG-GUCg -3'
miRNA:   3'- -UCCGUCAuac----ACCGCGCG----UGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 45270 0.66 0.437078
Target:  5'- cGGGCuuc--GUGGCGCGgacagcugcCGCUGCGCa -3'
miRNA:   3'- -UCCGucauaCACCGCGC---------GUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 37255 0.69 0.301235
Target:  5'- cGGCGcgcGUcGUGagcGGCGUGuCGCCGCGCUg -3'
miRNA:   3'- uCCGU---CA-UACa--CCGCGC-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 44469 0.69 0.301235
Target:  5'- cGGCAGgccguUGUacCGCGCA-CGCGCCg -3'
miRNA:   3'- uCCGUCau---ACAccGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20844 0.73 0.141338
Target:  5'- gAGcGCAGgcGUGUcgacguucaGGCGCGCAgCCGCGUCg -3'
miRNA:   3'- -UC-CGUCa-UACA---------CCGCGCGU-GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30045 0.72 0.1663
Target:  5'- cGGCGccg-GUGGCaGCGCgGCCGCGCUc -3'
miRNA:   3'- uCCGUcauaCACCG-CGCG-UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 21945 0.72 0.177349
Target:  5'- gGGGCuaugcgcagcgaaccAGcuUGUaGCGCGCGCCGCGUCg -3'
miRNA:   3'- -UCCG---------------UCauACAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9686 0.72 0.185073
Target:  5'- cGGCAGcc---GGUGCGCaaccggccgauGCCGCGCCg -3'
miRNA:   3'- uCCGUCauacaCCGCGCG-----------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 12447 0.71 0.21115
Target:  5'- cGGGCGGggcgcgGGCGgGCGCUacgGCGCCc -3'
miRNA:   3'- -UCCGUCauaca-CCGCgCGUGG---CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 6649 0.71 0.216731
Target:  5'- uGGCGGcgAUGcgGGCuuucgcGCGUACgCGCGCCg -3'
miRNA:   3'- uCCGUCa-UACa-CCG------CGCGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30493 0.71 0.195145
Target:  5'- gAGGCAGUcgcuacGGCGCGCGaauucgguCCGgCGCCg -3'
miRNA:   3'- -UCCGUCAuaca--CCGCGCGU--------GGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 20479 0.7 0.228272
Target:  5'- aAGGCGGUGacgaGcGGCGCGgcCACUGCgGCCa -3'
miRNA:   3'- -UCCGUCAUa---CaCCGCGC--GUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 2527 0.7 0.234236
Target:  5'- cGGCuucGUuc--GGCGCGCagguguucGCCGCGCCg -3'
miRNA:   3'- uCCGu--CAuacaCCGCGCG--------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 33490 0.69 0.272797
Target:  5'- cGGCuacg-GUucGGCGCGCagucGCUGCGCCg -3'
miRNA:   3'- uCCGucauaCA--CCGCGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 47804 0.69 0.272797
Target:  5'- cGGGguGUAcgagGccacGGCGCGCGaCGUGCCg -3'
miRNA:   3'- -UCCguCAUa---Ca---CCGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 25204 0.69 0.279698
Target:  5'- cGGGCAGgccgcgaacGUGcGCGC-CGCCGUGCUc -3'
miRNA:   3'- -UCCGUCaua------CAC-CGCGcGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 3291 0.69 0.279698
Target:  5'- cGGCGucaUcgGggcgGGCgGCGCGCCGgGCCg -3'
miRNA:   3'- uCCGUc--AuaCa---CCG-CGCGUGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 48177 0.66 0.446678
Target:  5'- cGGCGcg--GUGcGCGCGCccgguugccGCCuGCGCCu -3'
miRNA:   3'- uCCGUcauaCAC-CGCGCG---------UGG-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.